Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01089 ATGGTGGTAGTGttactaatactaataatatttcCTTACGACAAAGTTTATGGTGATGAACAACAAGATTCATGTTCTACAAGGTGCGGTGTCCATAACATCAGCCATCCTTTTCGGTTGAAAGACGGTCCGGAAAAGTGTGGTGACAAGAGGTACAATCTATCATGTGAGAACAACAACCAATTGATTTTGTACTATGAATCATTTGGAAAATACTATGTACAATCAATTAATTACAACAACTTCACCATACGTCTAATGGATTTCAATCTTGGTTACTTTAATAATTCCCAGCTCCCTCCTTATTATTCATTAGGACTCTACAATTTCAGTTTATCCGTCACCTCACCCTATAAATTCAGAAACCAATATCTGAATGTATTGTCGAAATCTATGTTATATGTAAGCTGTCCAAATAAGGTACAATCCTCCGGTTATATGTACGGTGCTAACTGTATGAATAGTACTTCGTATTCACAAAACCAGAATTCTTTATATGTTGATGGCTACAACAAATCTCTGTCGGATTTTGGGATGGGAGACGAGTGTCGTATAGAGTTTATGTATCTCACATCTTGGCCTCTTGAACATGGTGGTCGTCGTGGCAACAACGACAACATTTCTTGTTCGGACATCCGTCATATGATGTTTTATGGATTTGAACTTTCTTGGTTCAATAGTCTTTGTGAAGATGGTTGGAGTGCGCAGCTCGTTGACAATAACCAGCTTCTCTGTAAAGAATATCCATCATATACTCTTTCAATTAGGGATTTGCTAGTAGGGATCTCCACTTTCACAGGTGAGTTGATTTTTTTGTTCGCCATTGTTAAATTTGTCATTGGAGCCCCATGTATCATTGTATTATTAATCTACAAATGGCGACGAAAGCATCAATCTATGTATGACAGCATCGAAGATTTTCTACGTAGTGACAATAGCATCATTCCAATAAGGTACTCTTACAAAGATATAAAAAAGATAACCGATAAATTTAAGACAAAACTAGGCAGTGGTGGTTATGGATCTGTTTTTAAAGGACAACTTCGAAGTGGTCGCCTTGTAGCAGTCAAATTATTGGACAAAGGCAAGTCAAACGGTCAAGATTTTGTCAATGAAGTTGCTACCATTGGTAGAATTCATCATGTTAATGTGGTACAACTCATTGGTTTTTGTGTGGAAGGGTCAAAACGCGCTCTTATATATGAATTCATGCCAAATGGGTCGCttgaaaaatacatatattctCATATTGAAGAGAGTAATTTATTGAGTTGTGAACATTTGTATGCAATTTCTCTAGGAGTGGCTAGAGGCATTGAATATTTGCATAATGGATGCAATATGAAAATTCTACACTTTGACATAAAGCCTCATAACATCCTTCTTGATGAAAACTTTAATCCAAAAGTATCTGATTTTGGACTAGCGAGACTTTGTCCTACGGATAAAAGTATTGTGTCATTAACTGCAGCAAGAGGAACCATTGGATACATGGCCCCTGAACTATTCTACAGAAATGTTGGCACAATATCTTATAAAGCTGATGTTTATAGCTTTGGGATGTTGTTGATGGAGATGGCAAATAGAAGGAGGAACTTGAATGCATTAGCTGAGCAATCCAGCCAAATTTATGTCCCTTTTTGGGTTTATGATCAATTAAAAGATGGAAGGGAAATAACAATTGAGAATGATACAAATCAAGAAATGAAATTGGCAAAGAAAATGATGATCGTAGCTTTGTGGTGTATACAAACAAAACCTGGTGATCGTCCTCCAATGGATAAAGTAATTGAGAtgcttgaagaagaagatgaagatttacAAATGCCTAATAAGCCTTACTTGTATGCACAAGATCTACCGGCTGAGAATGTTAGAGATGATTGCAATGGCAGTTCNATGGTCTTCATCGAGTACATCGATAACTTATTCCAATGA 1938 0.3566 MVVVLLILIIFPYDKVYGDEQQDSCSTRCGVHNISHPFRLKDGPEKCGDKRYNLSCENNNQLILYYESFGKYYVQSINYNNFTIRLMDFNLGYFNNSQLPPYYSLGLYNFSLSVTSPYKFRNQYLNVLSKSMLYVSCPNKVQSSGYMYGANCMNSTSYSQNQNSLYVDGYNKSLSDFGMGDECRIEFMYLTSWPLEHGGRRGNNDNISCSDIRHMMFYGFELSWFNSLCEDGWSAQLVDNNQLLCKEYPSYTLSIRDLLVGISTFTGELIFLFAIVKFVIGAPCIIVLLIYKWRRKHQSMYDSIEDFLRSDNSIIPIRYSYKDIKKITDKFKTKLGSGGYGSVFKGQLRSGRLVAVKLLDKGKSNGQDFVNEVATIGRIHHVNVVQLIGFCVEGSKRALIYEFMPNGSLEKYIYSHIEESNLLSCEHLYAISLGVARGIEYLHNGCNMKILHFDIKPHNILLDENFNPKVSDFGLARLCPTDKSIVSLTAARGTIGYMAPELFYRNVGTISYKADVYSFGMLLMEMANRRRNLNALAEQSSQIYVPFWVYDQLKDGREITIENDTNQEMKLAKKMMIVALWCIQTKPGDRPPMDKVIEMLEEEDEDLQMPNKPYLYAQDLPAENVRDDCNGSXMVFIEYIDNLFQ 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01089 645 Pfam Protein kinase domain 332 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01089 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 450 462 IPR008271 GO:0004672|GO:0006468
Tsu01g01089 645 ProSiteProfiles Protein kinase domain profile. 329 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01089 645 PANTHER RUST RESISTANCE KINASE LR10-RELATED 266 623 IPR045874 GO:0004672
Tsu01g01089 645 PANTHER RUST RESISTANCE KINASE LR10-RELATED 4 232 IPR045874 GO:0004672
Tsu01g01089 645 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 4 232 - -
Tsu01g01089 645 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524
Tsu01g01089 645 SUPERFAMILY Protein kinase-like (PK-like) 310 601 IPR011009 -
Tsu01g01089 645 Gene3D Phosphorylase Kinase; domain 1 309 403 - -
Tsu01g01089 645 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 266 623 - -
Tsu01g01089 645 SMART serkin_6 329 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01089 645 Pfam Wall-associated receptor kinase galacturonan-binding 25 88 IPR025287 GO:0030247
Tsu01g01089 645 Gene3D Transferase(Phosphotransferase) domain 1 404 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01089 Tsu-Chr1 10051710 10055263 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01089 3 621 Receptor kinase-like Gene Family AT5G38260 35.616 2.81e-108 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g01089 Pkinase 3.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01089 - - aip:107605930 730.324