Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01088 atGTCATCCTTAACCTCAGCAGCATTAACCTTTGTTGTAGTGTTACTAATACTAACATTCCCTTACAACAAAGTGTATGGTGATGATGAACAACAAGATTCATGTTCGCGAAGGTGCGGTGTACATAACATCAGCCACCCTTTTCGGCTGGAAGACAGTCCGAAAAAGTGTGGCGATAAAAGGTACAACCTATCATGTGAGGACAACAACAAATTGATTTTGTACTATGAATTTGGAAAATACTATGTACAATCAATTAATTACAACAACTTCACTATAAGATTATTGGATTTCAATAATCTTGTGGATGACGATCACGATAACTCATTGGTTAAGACTATAGCATATGTGAGATGTCCCAATAATGTCCAAAATTCTTCTGGTATATTTTACTTTGATGAAGGTGGTGCTTGTATGAACATTACACATGAGAATTCATTCTATGTCAATTATATTGAATATGGATACCGGAAATCTCTTTCGAAATTGGATCTGGGAGACGGGTGTCGTATAGAGTTTATGTATCTCACATCTCTGCCGCTTGAACATGGTGGTCGTCGTGCCAACAATAACATTTCTTGTCCAAACATCCGTTCTATGATGTTTTATGGATTTGAACTTTCTTGGCTCAACAGTTTCTGTAAATATGGTCGGTTTGCATACCTCGATAAAAATAACCACCGTATTTGTGTATCTATTTCAGGCGATTGGAGTTTCCTGGAGTTTGTAGTCGTATCTATCTTGTCTCATATAGTTATGTCACTTGGTTTGTTTAGCGGTGTTAAATTTGTTCTTGGAGCGCCATGTATCATTGTATTATTAATCTACAAATGGCGACGAAAACATATATCTATGTATGACGGTATTGAAGATTTCCTACGTAGTGACAACAGTATTATGCCTATAAGATACTCTTACAAAGACATTAAAAAGATAACAGAACAATTCAAGACAAAACTCGGAAATGGAGGTTATGGAACTGTTTTTAAAGGAAAACTTCGAAGTGGTCGATTTGTAGCAGTTAAATTATTGGATAAAGGTAAGTCAAACGGTCAAGATTTTGTGAATGAAGTTGCTACCATTGGTAGGATTCACCATGTTAATGTGCCTCATAACATTCTTCTTGATGAGAATTTCAATCCAAAAGTTTCTGATTTTGGACTAGCTAGACTTTGCCCTACGGACAATAGCATTGTATCGTTAACTGCAGCAAGAGGAACCATTGGGTACATGGCCCCTGAACTATTCTACAAAAATGTTGGCACAATATCTCACAAAGCTGATGTTTATAGCTTTGGGATGTTGTTGATGGAGATGGCAAGTAGAAGGAAGAACTTGAATGCGCTGGCTGAGCAATCTAGCgaaatttattttcctttttggaTTTATGATCGGTTACATGATGGAAGAGAAgtaacaattgagaatgacacAAATTTGGAAATGAAATTAGCAAAGAAAATGATGATAGTGGCTTTATGGTGTATACAGACAAAACCCGAAGACCGTCCTTCAATGGATAAAGTGTTGGAGAtgcttgaagaagaagatggggACTTACAAATTCCTAATAAACCTTACTTTTGTCTACAAGATCAACCAGTAGCAGATGTTGGAGATGATAATATTAGCAGCTCATGGTCTTCCTATGGCACATCGGTAAGTGATCCAAGGGAACCAACTTGA 1686 0.3559 MSSLTSAALTFVVVLLILTFPYNKVYGDDEQQDSCSRRCGVHNISHPFRLEDSPKKCGDKRYNLSCEDNNKLILYYEFGKYYVQSINYNNFTIRLLDFNNLVDDDHDNSLVKTIAYVRCPNNVQNSSGIFYFDEGGACMNITHENSFYVNYIEYGYRKSLSKLDLGDGCRIEFMYLTSLPLEHGGRRANNNISCPNIRSMMFYGFELSWLNSFCKYGRFAYLDKNNHRICVSISGDWSFLEFVVVSILSHIVMSLGLFSGVKFVLGAPCIIVLLIYKWRRKHISMYDGIEDFLRSDNSIMPIRYSYKDIKKITEQFKTKLGNGGYGTVFKGKLRSGRFVAVKLLDKGKSNGQDFVNEVATIGRIHHVNVPHNILLDENFNPKVSDFGLARLCPTDNSIVSLTAARGTIGYMAPELFYKNVGTISHKADVYSFGMLLMEMASRRKNLNALAEQSSEIYFPFWIYDRLHDGREVTIENDTNLEMKLAKKMMIVALWCIQTKPEDRPSMDKVLEMLEEEDGDLQIPNKPYFCLQDQPVADVGDDNISSSWSSYGTSVSDPREPT 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01088 561 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 370 538 - -
Tsu01g01088 561 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 255 369 - -
Tsu01g01088 561 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524
Tsu01g01088 561 Gene3D Transferase(Phosphotransferase) domain 1 371 516 - -
Tsu01g01088 561 MobiDBLite consensus disorder prediction 539 561 - -
Tsu01g01088 561 Pfam Protein kinase domain 370 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01088 561 Gene3D Phosphorylase Kinase; domain 1 293 370 - -
Tsu01g01088 561 PANTHER RUST RESISTANCE KINASE LR10-RELATED 255 369 IPR045874 GO:0004672
Tsu01g01088 561 PANTHER RUST RESISTANCE KINASE LR10-RELATED 10 99 IPR045874 GO:0004672
Tsu01g01088 561 PANTHER RUST RESISTANCE KINASE LR10-RELATED 370 538 IPR045874 GO:0004672
Tsu01g01088 561 SUPERFAMILY Protein kinase-like (PK-like) 295 514 IPR011009 -
Tsu01g01088 561 ProSiteProfiles Protein kinase domain profile. 208 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01088 561 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 10 99 - -
Tsu01g01088 561 Pfam Wall-associated receptor kinase galacturonan-binding 35 97 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01088 Tsu-Chr1 10042366 10046673 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01088 196 547 Receptor kinase-like Gene Family AT1G66930 32.750 1.73e-54 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g01088 Pkinase 3.7e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01088 - - mtr:MTR_1g031450 428.328