LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g01084	ATGACACAAAAATTCAAGATAAAACTAGGCAATGGAGGTTATGGATCTGTTTTCAAGGGACAACTTCAAAGTGGTCGCAATGTAGCAGTTAAATTATTGGGCAATGTCAAATCCAGCGGTCAAGATTTTGTCAATGAAATTGTTACTATTGGTAGGATTCATCATGTTAATGTGGTACGACTTATTGGTTTTTGTGTTGAGGGTTCTAAACGTGCTCTTATATATGAATTCATGTCAAACGGATCACttgaaaaatacatattttctcCTGCTGAAGAGAGTTGTTCCTTGAGTTGCAAGGATTTGTATGCCATTTCTCTTGGAGTGGCTCGAGGCATTGAGTACTTGCATAATGGATGCAATATGAAAATTCTACACTTTGACATAAAGCCTCATAACATCCTTCTTGATGaaaatttcaatccaaaagtTTCTGATTTTGGACTAGCTAGACTTTCTCCTACGGATAAAAGCATTGTGTCATTAACTGCAGCAAGAGGAACCATCGGATACATGGCCCCTGAACTGTTCTACAGAAATGTTGGCACAATATCTCACAAAGCTGATGTCTATAGCTTTGGGATGTTGTTGATGGAGATGGCAAGTAGAAGGAAGAACTTGAATGCGCTGGCTGAGCAATCTAGCGAAATTTATTTCCCTTTTTGGATTTATGATCAGTTACATGATGGAAGAGAAgtaacaattgagaatgacacAAATTTAGAAATGAAATTAGCAAAGAAAATGATGATTGTGGCTTTATGGTGTATACAGACAAAACCCGAAGACCGTCCTTCAATGGATAAAGTGTTGGAGAtgcttgaagaagaagatggggACTTACAAATTCCTAATAAACCTTACTTTTGTCTACAAGATGAACCAGAATCAGAAGTTGGACATGGACAATATCATTCATGGTCAGCCCTTTTCAAAGTTCAGGCGCGAGTCCATGATGTTCTTGACCACATCATCATTCCGACAGCGGCAGAAGAAAAAGCTGCTTCTGAGAAGATCAAAGCCGACAATCCTGCTCTCTGGAAGCGTCTTGATGTTGTTGTCTTGCAGTGGATTTATGCCACGATCTCCACCGACATCCTCACCTCTATTCTCATCGACGACGATTCGGTGGAGAATGCTTGGAAAAGTGTTGCTGCTCTTTTTCAAGACAATAAAAACTCCAGAGCCATGTACCTTAATAAGGAATTTACCAGCACACAACTTGCTGACTTTTCGACGACAAACGCATACTGCAATGTCTCAAAAGTCTTGCCGATCAACTCGCAAATGTCGGGGCTCCTAACAAGAAAACGCTACCTACTTTTGCGACGGCTCGGTCTAAACTTGCCTTGGAGGAGACCACCCTCTCGGAGCGAGCAAAGCAACAACGGTGTTGGCGGACGGTATGGTGGCAGCGCCCAATCTGGTGGCAACCGAAGCAACAACCGTTGGGGTGGGCACACCGGTGGTCGTGGACAGTCGATGCAGCAACAATGGAGTCAACCACCGTGGTGGGCGATGGTTCAAGCACCTTGGGCCATGCCTCCATGTCCCTACCCAACTCAACAATGGGCTCAGCCACCTAAACCACGACAGCCTGGGGTATTAGGCCCAAGACCACAACAGAAGGCCTATGCAGCAACAACACAATGGACTCCAACAGCTCCAACAGACATCGAATCTGCATTACACACGATGTCCCTCTCTCAACCCGATCCAGAGTGGTACATGGACACCGGAGCAACATCCCACATGACGTGCACACAAGGTAATTTCTCgtcttattttaatttgagcAAACATAATGGAATCATCGTTGGTAGTGGTCAATCAATTCCAATTTATGGTTATGGCCATACATCCTTACCTCCACCTAATCCACCCTTATCTTTAAAGAATGTCCTTCATGCACCTAAACTCATTAAAAATTTAGTGTCGGTAAGAAAATTTACTACTGATAATAATGTATGTGTGATTTTTGATCCGTTTGGTTTTTCTGTCAATGACTTACAGACGGGAAGGCGTCTAATGCGATGTGATAGCACAAAAAACTCTGATGGTTCTTTTGAGAGGCATAAAACTCGTCTTGTAGATGATGGCAAAACTCAACAGGTGGGCATTGATTGTGGCGAAACTTTCAGTCCGGTGGTCAAACCAGCAAAAATTCGAATTGTCCTCTCTCTTGCTTTGTCAAAAAATTGGCAAATTCGTCAATTGGATGTAAAAAATGCCTTTTTACACGGTGAGCTCAAGGAGAAAGTCTATATGCATCAACCTATGGGTTTTAGGGATTCTGTACATCCAGACTATGCCAATCTTAGCTCTGAGTTTGCTATGAAGGACTTAGGTTCGGTGAATTATTTTTTGGGCATAAGTGTGACGCGCCATCAGGGAGGATTATTTCTATCACAACGTAAATATGCGGCGGAAATAATTGATCGTGCGGGTATGTCCTCTTGTAAACCTGCTCAAACTCCAGTTGACACTAAACCCAAAATTAGCGCTACAACAGGTGTTCCGTATCAAGATCCGAAGAAGTATCGCAGTCTTGCAGGTGCTCTACAATATCTCGCATTTACTAGACCCGACATTTCTTATGCGGTTCAACAGATTTGTCTTCATATGCATGACCCCCGTGATGAGCATATGAACGCTTTGAAACGTATCATACGCTATGTTCAGGGCACTCTTCATCTTGGTTTACACTTGTATCCTTCCTCAGTTGGAGATCTTGTTTCCTATACGGATGCTGATTGGGGAGGATGTCCTGATACTAGACGCTCCACATCAGGATATTGTGTGTTTCTTGGTGAAAATCTGATTTCGTGGTTGTCAAAACGTCAGCCTACACTATCTCGTTCTAGTGCAGAGGCCGAATACAGGGGGGTGGCTAATGTTGTTTCCGAGTCTTGTTGGATTCACAATCTCCTTTTGGAACTACATTGTCCTGTTCGAAAAGCTACTTTAGTTTATTGCGACAATGTCAGTGCTATTTATCTCTCCGGGAACCTCGTTCAACACCAGCGCACAAAGCATATTGAAATGGATATTCATTTTGTCCGAGAAAAGGTTGCACGTGGAGAAGTTCGTGTTCGTCATGTCCCTTCTTGTTATCAGATAGCTGACATCTTTACTAAGGGATTGCTGCTTATTTTGTTTGAGGACTTCCGCAACAGTCTCAGTGTTCGTGATCCTCCCGCTTCGACTGCGGGGATGTGA	3219	0.4203	MTQKFKIKLGNGGYGSVFKGQLQSGRNVAVKLLGNVKSSGQDFVNEIVTIGRIHHVNVVRLIGFCVEGSKRALIYEFMSNGSLEKYIFSPAEESCSLSCKDLYAISLGVARGIEYLHNGCNMKILHFDIKPHNILLDENFNPKVSDFGLARLSPTDKSIVSLTAARGTIGYMAPELFYRNVGTISHKADVYSFGMLLMEMASRRKNLNALAEQSSEIYFPFWIYDQLHDGREVTIENDTNLEMKLAKKMMIVALWCIQTKPEDRPSMDKVLEMLEEEDGDLQIPNKPYFCLQDEPESEVGHGQYHSWSALFKVQARVHDVLDHIIIPTAAEEKAASEKIKADNPALWKRLDVVVLQWIYATISTDILTSILIDDDSVENAWKSVAALFQDNKNSRAMYLNKEFTSTQLADFSTTNAYCNVSKVLPINSQMSGLLTRKRYLLLRRLGLNLPWRRPPSRSEQSNNGVGGRYGGSAQSGGNRSNNRWGGHTGGRGQSMQQQWSQPPWWAMVQAPWAMPPCPYPTQQWAQPPKPRQPGVLGPRPQQKAYAATTQWTPTAPTDIESALHTMSLSQPDPEWYMDTGATSHMTCTQGNFSSYFNLSKHNGIIVGSGQSIPIYGYGHTSLPPPNPPLSLKNVLHAPKLIKNLVSVRKFTTDNNVCVIFDPFGFSVNDLQTGRRLMRCDSTKNSDGSFERHKTRLVDDGKTQQVGIDCGETFSPVVKPAKIRIVLSLALSKNWQIRQLDVKNAFLHGELKEKVYMHQPMGFRDSVHPDYANLSSEFAMKDLGSVNYFLGISVTRHQGGLFLSQRKYAAEIIDRAGMSSCKPAQTPVDTKPKISATTGVPYQDPKKYRSLAGALQYLAFTRPDISYAVQQICLHMHDPRDEHMNALKRIIRYVQGTLHLGLHLYPSSVGDLVSYTDADWGGCPDTRRSTSGYCVFLGENLISWLSKRQPTLSRSSAEAEYRGVANVVSESCWIHNLLLELHCPVRKATLVYCDNVSAIYLSGNLVQHQRTKHIEMDIHFVREKVARGEVRVRHVPSCYQIADIFTKGLLLILFEDFRNSLSVRDPPASTAGM	1072

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g01084	1072	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	124	136	IPR008271	GO:0004672\|GO:0006468
	Tsu01g01084	1072	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	1	291	IPR045874	GO:0004672
	Tsu01g01084	1072	CDD	RNase_HI_RT_Ty1	914	1048	-	-
	Tsu01g01084	1072	PANTHER	INSENSITIVE 1-ASSOCIATED RECEPTOR KINASE 1, PUTATIVE-RELATED	1	291	-	-
	Tsu01g01084	1072	ProSiteProfiles	Protein kinase domain profile.	3	289	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu01g01084	1072	Pfam	Reverse transcriptase (RNA-dependent DNA polymerase)	683	764	IPR013103	-
	Tsu01g01084	1072	Pfam	Reverse transcriptase (RNA-dependent DNA polymerase)	772	827	IPR013103	-
	Tsu01g01084	1072	Pfam	Protein kinase domain	7	272	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu01g01084	1072	SUPERFAMILY	Protein kinase-like (PK-like)	8	275	IPR011009	-
	Tsu01g01084	1072	MobiDBLite	consensus disorder prediction	454	500	-	-
	Tsu01g01084	1072	MobiDBLite	consensus disorder prediction	520	539	-	-
	Tsu01g01084	1072	Gene3D	Transferase(Phosphotransferase) domain 1	79	283	-	-
	Tsu01g01084	1072	MobiDBLite	consensus disorder prediction	520	535	-	-
	Tsu01g01084	1072	ProSitePatterns	Protein kinases ATP-binding region signature.	9	31	IPR017441	GO:0005524
	Tsu01g01084	1072	MobiDBLite	consensus disorder prediction	452	500	-	-
	Tsu01g01084	1072	Gene3D	Phosphorylase Kinase; domain 1	9	78	-	-
	Tsu01g01084	1072	SUPERFAMILY	DNA/RNA polymerases	684	1019	IPR043502	-
	Tsu01g01084	1072	SMART	serkin_6	3	274	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g01084	Tsu-Chr1	10027537	10033668	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu01g01084	1	298	Receptor kinase-like Gene Family	AT5G39030	50.000	1.52e-92	311

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Tsu01g01084		Pkinase	5.5e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g01084	-		-	mtr:MTR_1g031200	519.62