Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01082 ATGAGGACACCTAAGCGTGATCGAGCTTGTAATCCTTATGCACCAATGAGTCCTCCTAGGGATAACTGGGAGGGTGGAAATCCAAGCTCTTCGGGTGCCAGTCCACAGTACCAGGAAATTATACTATGTAATGGTTTTCTAAGACATTTCATTGATTCTTTACGAGATGAAGTTCGAATAGTGAAAAGAGTTCCCAAAATGTTTAGTAGCAAAAATGGATACTCCGCCCTGAAGATGCCTCCTGTTAGCTGGTCAAATGAAAAGTATTACCTGGAGCAGGTTGTACCTAGAAAGGAACTTCAGCTTGTTGGCATAAGCTCAATGCTTATAGCTTCCAAATATGAAGATATTTGGGCACCAGAGGTTAATGACTTTGTATGCATATCAGACAATGCATATGTTGGAGATCAGGTTCTGATTATGGAGAAAACAATCTTGAGAAAACTGGAATGGTATTTGACAGTTCCTACTCCTTATGTCTTTATGATTCGGTACATTAAAGCCTCGACTCCTGATAAAGAGATGGAAAACATGGTGAATTTCCTAGGTGAGCTATCTATGATGCATTATGCTACTGTCTACTTGTATTGCCCTTCAATGATCGCTGCTTCTGCTGTTTATGCGGCAAGATCTACCGTTGAAAGGAGCCCTGTTTGA 657 0.4094 MRTPKRDRACNPYAPMSPPRDNWEGGNPSSSGASPQYQEIILCNGFLRHFIDSLRDEVRIVKRVPKMFSSKNGYSALKMPPVSWSNEKYYLEQVVPRKELQLVGISSMLIASKYEDIWAPEVNDFVCISDNAYVGDQVLIMEKTILRKLEWYLTVPTPYVFMIRYIKASTPDKEMENMVNFLGELSMMHYATVYLYCPSMIAASAVYAARSTVERSPV 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01082 218 SUPERFAMILY Cyclin-like 89 153 IPR036915 -
Tsu01g01082 218 Pfam Cyclin, C-terminal domain 156 214 IPR004367 -
Tsu01g01082 218 PANTHER CYCLIN-B1-4 93 214 - -
Tsu01g01082 218 Pfam Cyclin, N-terminal domain 88 153 IPR006671 -
Tsu01g01082 218 MobiDBLite consensus disorder prediction 1 32 - -
Tsu01g01082 218 CDD CYCLIN 154 217 IPR013763 -
Tsu01g01082 218 CDD CYCLIN 87 146 IPR013763 -
Tsu01g01082 218 Gene3D - 83 147 - -
Tsu01g01082 218 Gene3D - 148 218 - -
Tsu01g01082 218 PANTHER CYCLINS 93 214 IPR039361 -
Tsu01g01082 218 SUPERFAMILY Cyclin-like 155 215 IPR036915 -
Tsu01g01082 218 SMART cyclin_7 62 147 IPR013763 -
Tsu01g01082 218 SMART cyclin_7 160 218 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01082 Tsu-Chr1 10019997 10022641 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01082 87 217 Core Cell Cycle Gene Families AT3G11520 57.252 2.42e-52 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01082 K21777 - gmx:547782 204.912