Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01081 atgtcaTCCTTAACTTCTGCAGCATTAACCTTTGTTGTAGTGTTACTACTGCTAATAATACTCCCTTACAACAAAGTGTATGGTGATGATGAACAAGATTCATGTTCACGAAAGTGCGGTGTTCATAACATCAGCCATCCTTTTCGGTTGAAAGACGGTCCGGAAAAGTGTGGTGACAAGAGGTACAATCTATCATGTGAGAACAACAACCAATTGATTTTGTACTATAAATCATTTGGAAAATACTTTGGAAAATACTATGTACAATCAATTAATTACAACAACTTCACTATAAGATTATTGGGTTTCAATAATCTTGGTTACTCTAATTATTCCCTACCTCCTCATTCACTAGGCCTCTATAATTTCACTTCAAAGTTCAATGAAACAAGAAGAAAGCCTTACCAAGTGGATGACGATCACGATAACTCATTGGTTAAGACTATAGCATATGTGAGATGTCCCAATAATGTCCAAAATTCTTCTGGTATATTTTACTTTGATGAAGGTGGTGCTTGTATGAACATTACACATGAGAATTCATTCTATGTCAATTATATTGGATATGGATATCAGAAATCTCTTTCGAAATTGGATCTCGGAGATGGGTGTCGTATAGAGTTTATGTATCTCACATCTTGGCCTCTGGAACATGGTGGTCGTCGTGGCAACAATATTTCTTGTTCGGATATCCGTCATATGATGTTTTATGGATTTGAACTTTCATGGTTCAACAGTCTCTGTAAAGATGGTGGGTATTGGTATCGAGACGTGGATAAAAATAGTCATGGTTTCTGTGCATCTTTAGCTGCACTGGGGATTTCGTTCAGCACAGTTAAATTTGTTCTTGGAGTCCCATGTATCATTGTATTATTAATCTACAAATGGCGACAAAAACATTTATCAACGTATGACAACATCGAAGATTTTCTTAGCAGTGACAATAGCATCATGCCTATAAGGTACTCTTACAAAGatataaaaaagataacaaAACAATTCACGACAAAATTGGGCAATGGAGGTTATGGATCTGTTTTCAAAGGACAACTTCGAAGTGGTCGTCTTGTAGCAGTTAAATTATTGGACAATGTCAAGTCTAACGGTCAGGATTTTGTCAACGAAGTCGCTACCATCGGCAGGATTCATCATATTAATATTGTACAACTTATTGGTTTTTGTGTGGAGGGTTCTAAACGTGCTCTAATATATGAATTCATGCCAAATGGATCACttgaaaaatacatattttctcATATTGAAGAGAGTAAATTCTTGAGTTGTGAAAATTTGTATGCCATTTCTCTTGGAGTGGCTCGAGGCATTGAATATTTGCATAATGGATGCAATATGAAAATTCTACACTTTGACATAAAGCCTCATAACATCCTTCTTGATGAAAACTTTAATCCAAAAGTATCTGATTTTGGACTAGCGAGACTTTGTCCTACAGATAAAAGTATTGTGTCATTAACCGCAGCAAGAGGAACCATTGGATACATGGCCCCTGAACTATTCTACAGAAATGTTGGCACAATATCTTACAAAGCGGATGTCTATAGCTTCGGGATGTTGTTAATGGAGATGGCAAATAGAAGGAGGAACTTGAATGCATTAGCTGAGCAATCCAGCCAAATTTATGTCCCTTTTTGGGTTTATGATCAATTAAAAGATGGAAGGGAAATAACAATTGAGAATGATACAAATCAAGAAATGAAATTGGCAAAGAAAATGATGATCGTAGCTTTGTGGTGTATACAAACAAAACCTGGTGATCGTCCTCCAATGGATAAAGTAATTGAGAtgcttgaagaagaagatgaagatttacAAATGCCTAATAAGCCTTACTTTTGTCTACAAGATGAATCAGTATCAGAAGTTGGACATGATAATATTAACAGCTCATGGACTTCCTAA 1920 0.3495 MSSLTSAALTFVVVLLLLIILPYNKVYGDDEQDSCSRKCGVHNISHPFRLKDGPEKCGDKRYNLSCENNNQLILYYKSFGKYFGKYYVQSINYNNFTIRLLGFNNLGYSNYSLPPHSLGLYNFTSKFNETRRKPYQVDDDHDNSLVKTIAYVRCPNNVQNSSGIFYFDEGGACMNITHENSFYVNYIGYGYQKSLSKLDLGDGCRIEFMYLTSWPLEHGGRRGNNISCSDIRHMMFYGFELSWFNSLCKDGGYWYRDVDKNSHGFCASLAALGISFSTVKFVLGVPCIIVLLIYKWRQKHLSTYDNIEDFLSSDNSIMPIRYSYKDIKKITKQFTTKLGNGGYGSVFKGQLRSGRLVAVKLLDNVKSNGQDFVNEVATIGRIHHINIVQLIGFCVEGSKRALIYEFMPNGSLEKYIFSHIEESKFLSCENLYAISLGVARGIEYLHNGCNMKILHFDIKPHNILLDENFNPKVSDFGLARLCPTDKSIVSLTAARGTIGYMAPELFYRNVGTISYKADVYSFGMLLMEMANRRRNLNALAEQSSQIYVPFWVYDQLKDGREITIENDTNQEMKLAKKMMIVALWCIQTKPGDRPPMDKVIEMLEEEDEDLQMPNKPYFCLQDESVSEVGHDNINSSWTS 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01081 639 Pfam Wall-associated receptor kinase galacturonan-binding 35 100 IPR025287 GO:0030247
Tsu01g01081 639 Gene3D Transferase(Phosphotransferase) domain 1 407 615 - -
Tsu01g01081 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 453 465 IPR008271 GO:0004672|GO:0006468
Tsu01g01081 639 SUPERFAMILY Protein kinase-like (PK-like) 311 604 IPR011009 -
Tsu01g01081 639 PANTHER RUST RESISTANCE KINASE LR10-RELATED 276 627 IPR045874 GO:0004672
Tsu01g01081 639 PANTHER RUST RESISTANCE KINASE LR10-RELATED 11 250 IPR045874 GO:0004672
Tsu01g01081 639 SMART serkin_6 332 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01081 639 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 11 250 - -
Tsu01g01081 639 ProSitePatterns Protein kinases ATP-binding region signature. 338 360 IPR017441 GO:0005524
Tsu01g01081 639 ProSiteProfiles Protein kinase domain profile. 332 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01081 639 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 276 627 - -
Tsu01g01081 639 Pfam Protein kinase domain 335 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01081 639 Gene3D Phosphorylase Kinase; domain 1 309 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01081 Tsu-Chr1 9991589 10016336 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01081 1 616 Receptor kinase-like Gene Family AT5G38260 34.844 1.45e-106 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g01081 Pkinase 5.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01081 - - aip:107607706 687.567