Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01080 ATGTTATCCTTAACCCTTGTTGTAGTGGTGTTGTTATTAACATTTCCTTACAACAATGTGTATGGTGATGAACAACAAGATTTATGTTCTACAAGGTGCGGTGTCCATAACATCAGCCATCCTTTTCGGTTGAAAGACGGTCCGGAAAAGTGTGGTGACAATAGGTACAACCTATCATGTGAGGACAACAACCAATTGATTTTGTACTATGAAGCTGGAAAACACTATGGAAAATATTATGTACAATCAATTAATTACAACAACTTCACCATACAATTATTTGATTCCAATCTTGCAGCTTCTAATAATTCCCAGCTTCCTCCTTATTATTCTTTAGGACTCTATAATTTCAGTTACTTCACCTCACCCTATCTAGCTTATCATCGATACAAAAACGATACTCATCAAGTATTGGCGAAATCTATATTATATGTGAGTTGTCCTAGTCGGATGGAATATTCGTATGTTGGTAATTGTATGAATAGTACTTCGTATTCGCAATACAAGAATCTTTTCTATGTTGATGGCTACAATGAATCTTTGTCGAATTTAAGGATGGGAGACGGGTGTCGTATAGAGTTTATGTATCTCACATCTTGGCCTCTTGACCatggcaacaacaacaacaacaacatttctTGTATGGATATCCGTCATATGGTGGTTTATGGATTTGAACTTTCTTGGCTCTATAGTTTTTGTAAAGTTGAAGATCGACTTCTGTATGCAGAGCTCGATCAATATAACAAACCTCGATGTGTACATCCAGGTATATTACTTGGTTTGTTTAGCTGTGTAAAATTTGTTGTTGGAGTGCCATGTATCATTGTATTACTAATCAACAAATGGCGACAAAAACATTTATCTGTGTATGATGGTATCGAAGATTTCCTACGCAGTGACAATAGTATTATGCCTATAAGATACTCTTACAAAGACATTAAAAAGATAACAGAACAATTCAAGACAAAACTAGGAAGTGGAGGTTATGGATCTGTTTTTAAAGGAAAACTTCTAAGTGGTCGACTTGTAGCAGTCAAATTATTAGACAAAGGCAAGTCAAGCGGTCAAGATTTTGTCAATGAAGTTGCTACCATTGGTAGGATTCACCATGTTCATGTGGTACAACTCATTGGCTTTTGTGTGGAGGGCGCAAACCGTGCTCTTATATATGAATTCATGCCAAATGGATCACTCgaaaaatacatatattcacATACCGTAGAAAAATATTCCTTGAGTTGCGAACAATTGTATATCATTTCTCTTGGAGTGGCTCGAGGCATTGAGTACTTGCATAATGGATGTAATATGAAAATTCTACACTTTGACATAAAGCCTCATAACATTCTTCTTGATGAGAATTTCAATCCAAAAGTATCTGACTTTGGACTAGCTAGACTTTGCCCTACGGACAATAGCACTGTATCGTTAACTGCAGCAAGAGGAACCATTGGGTACATGGCCCCTGAACTATTCTATAGAAATGTTGGCACAATATCTTACAAAGCTGATGTTTATAGCTTTGGGATGTTGTTAATGGAGATGGCAAGTAGAAGGAAAAACTTGAATGCATTGGCTGAGCAATCTAGCCAAGTTTATTTCCCTTTTTGGGTTTAtgatcaattaaatgatggaaTCGAAGTGACAATTGAGAATGACACAAATCAAGAAATGAAATTGGCAAAGAAAATGATGATTGTGGCTTTATGGTGTATACAAACAAAACCAGGCGAGCGTCCTCCGATGGATAAAGTGTTGGAGATGCTTGAGGAAGAAGACGATAATTTGAAAATGCCTAATAAACCTTACCTTTATCCACAAGATCTATCATCTAAGGATGTTGAAGATGATATAACTGGCAGGTCATGGTCTTCCTCTAGTACATCAATAATTGATTCCAAGGAAACAACCTTGGATGTGTCACATatcatttgcttataa 1944 0.3524 MLSLTLVVVVLLLTFPYNNVYGDEQQDLCSTRCGVHNISHPFRLKDGPEKCGDNRYNLSCEDNNQLILYYEAGKHYGKYYVQSINYNNFTIQLFDSNLAASNNSQLPPYYSLGLYNFSYFTSPYLAYHRYKNDTHQVLAKSILYVSCPSRMEYSYVGNCMNSTSYSQYKNLFYVDGYNESLSNLRMGDGCRIEFMYLTSWPLDHGNNNNNNISCMDIRHMVVYGFELSWLYSFCKVEDRLLYAELDQYNKPRCVHPGILLGLFSCVKFVVGVPCIIVLLINKWRQKHLSVYDGIEDFLRSDNSIMPIRYSYKDIKKITEQFKTKLGSGGYGSVFKGKLLSGRLVAVKLLDKGKSSGQDFVNEVATIGRIHHVHVVQLIGFCVEGANRALIYEFMPNGSLEKYIYSHTVEKYSLSCEQLYIISLGVARGIEYLHNGCNMKILHFDIKPHNILLDENFNPKVSDFGLARLCPTDNSTVSLTAARGTIGYMAPELFYRNVGTISYKADVYSFGMLLMEMASRRKNLNALAEQSSQVYFPFWVYDQLNDGIEVTIENDTNQEMKLAKKMMIVALWCIQTKPGERPPMDKVLEMLEEEDDNLKMPNKPYLYPQDLSSKDVEDDITGRSWSSSSTSIIDSKETTLDVSHIICL 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01080 647 Gene3D Transferase(Phosphotransferase) domain 1 394 604 - -
Tsu01g01080 647 Gene3D Phosphorylase Kinase; domain 1 298 393 - -
Tsu01g01080 647 PANTHER RUST RESISTANCE KINASE LR10-RELATED 6 235 IPR045874 GO:0004672
Tsu01g01080 647 ProSiteProfiles Protein kinase domain profile. 319 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01080 647 Pfam Wall-associated receptor kinase galacturonan-binding 29 95 IPR025287 GO:0030247
Tsu01g01080 647 SUPERFAMILY Protein kinase-like (PK-like) 300 591 IPR011009 -
Tsu01g01080 647 PANTHER RUST RESISTANCE KINASE LR10-RELATED 259 619 IPR045874 GO:0004672
Tsu01g01080 647 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 6 235 - -
Tsu01g01080 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Tsu01g01080 647 SMART serkin_6 319 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01080 647 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 259 619 - -
Tsu01g01080 647 Pfam Protein kinase domain 322 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01080 647 ProSitePatterns Protein kinases ATP-binding region signature. 325 347 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01080 Tsu-Chr1 9981199 9989927 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01080 3 619 Receptor kinase-like Gene Family AT5G38260 34.947 4.85e-102 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g01080 Pkinase 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01080 - - aip:107605930 716.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01080 01 9981199 9989927 Tsu01g01080 01 9981199 9989927 ECH