Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01054 ATGGGTGAATTAACATATTGTGAGAAAGCTAATGCATGGTTAAGGAATTCAAAGTCATATTTGCTAATAATTAGTTTGCAATTTGGCTCTGCTGGCATGTATGTTCTTACCATGGATGCTCTTAATAAGGGCATGAGTCATTATATTTTTGTGGTATATCGTAATGTCATCGCCACTATAGCTCTTGCTCCCTttgcattttttcttgaaaGGAAAATTAGGCCCAAGATGACAGTTCGGATATTCTCAGAAATTTTTGCACTGGCTTTTGTTGAgatAATACTTGATCAGTGTTTCACGTTCTTGGGGATGAAGCTAACATCAGCATCTTTTGCATCTGCCGTGATGAATTCCGTACCATCTATTACCTTTGTACTTGCAATCATTTTtagCAGATTGGAGCGCATGAAAATTAAGGAGATAGGATGTCAAGCTAAAGTGATTGGCACAGTAGTGAGTTTGGGAGGTGCATTTCTGATGGCACTATACAAAGGTCCAGTTCTACAAATTGCTGGGTCATCAGCAGCTACTCAAATGCATCAGCCTGAAAATGTGAATGACCCTAGTGGTTCACATTGGCTCCTTGGTGCATTGTTCCTTCTCATTGGTTGTGCCGGCTTCTCTGCTTTCTACATTTTACAAGCCATAACATTAAGAAAGTATCCGGCAGAGATGTCACTAGCCACGTGGGTTTGTTTTATTGGTGCACTTCAAAGTAGTGCCGTGACAATTTTCATGGAGCGTAAAAACCCCGAAGCCTGGGCTTTGGGCCTGGATTCAAGACTCTTTGCTTCGGTCTACGCGGGAATAGTAACTTCAGCAATTCAATTTTATGTGCAAGGCTCAGTAATTAAAACTATGGGCCCTGTTTTCGTGACTGCTTTTAATCCCCTACGTATGATTATAGTCACAGCCTTGGCTTGTATCGTCCTCTCGGAGAAACTCCATCTCGGAAGCATTGTTGGAGGAGTGGTAGTGGTTACAGGGTTATATCTTGTTGTATGGGGCAAATCCAaagaacaaaaaagaataatgtTAGAAGAAGAGGCTCCACAAAAAATCTCCCAACAAGGACAACAACAACTACCAATAACTGTCCCCAAAATTGATGtcaatgataataataataaatctcAATTGGTCATAATTGGAGACCAAACAAGCACATAG 1170 0.3923 MGELTYCEKANAWLRNSKSYLLIISLQFGSAGMYVLTMDALNKGMSHYIFVVYRNVIATIALAPFAFFLERKIRPKMTVRIFSEIFALAFVEIILDQCFTFLGMKLTSASFASAVMNSVPSITFVLAIIFSRLERMKIKEIGCQAKVIGTVVSLGGAFLMALYKGPVLQIAGSSAATQMHQPENVNDPSGSHWLLGALFLLIGCAGFSAFYILQAITLRKYPAEMSLATWVCFIGALQSSAVTIFMERKNPEAWALGLDSRLFASVYAGIVTSAIQFYVQGSVIKTMGPVFVTAFNPLRMIIVTALACIVLSEKLHLGSIVGGVVVVTGLYLVVWGKSKEQKRIMLEEEAPQKISQQGQQQLPITVPKIDVNDNNNKSQLVIIGDQTST 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01054 389 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 163 - -
Tsu01g01054 389 Pfam EamA-like transporter family 19 160 IPR000620 GO:0016020|GO:0016021
Tsu01g01054 389 Pfam EamA-like transporter family 195 334 IPR000620 GO:0016020|GO:0016021
Tsu01g01054 389 PANTHER WAT1-RELATED PROTEIN 14 370 IPR030184 GO:0016021|GO:0022857
Tsu01g01054 389 SUPERFAMILY Multidrug resistance efflux transporter EmrE 230 339 - -
Tsu01g01054 389 PANTHER WAT1-RELATED PROTEIN 14 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01054 Tsu-Chr1 9696600 9699768 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01054 9 361 Nodulin-like Gene Family AT2G37460 44.094 8.44e-113 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01054 - - gmx:100813852 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01054 01 9696600 9699768 Tsu01g01054 01 9696600 9699768 ECH