Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01031 ATGTCCTCCATTGAATCCTATTCCATCCATGTTGAAGAATCCCAACACATCGTCCCACAAAGTAGTTGTTTACTCGAGTATTTCTACATTAACCTTCATCACTTCCACTCCACTTCATTAAACCATTACTTCTTCATAATTCCTCGTAAGATCTTATgtgattatgatgattttgaatCCATAGATCCTGATAGTATTACTCGTACCTACTTGCACAACACTTTCTCATGCGTGCCAATTTCTTCTGAAGTGTTGGAACAAGCTCTACTTCTTATGAGTGATAATGCTAGGTATATGAACACGGTGAACATCGAAAGATATAGTTTATTGGAGATGGATGTGTTCATTAGAACAACGTCAAATGAAGGTATGAATGTTATTGATGACCAAAATGCATCTATTACGACCCTTTTAAGTTTGTTAGAGAAGGTTAAATTGGACGATATTATTTGTTCAATGGAACAATGTGCAATTTGTTTGGAGGAATTTTGCCATGAATCAAAACCAGATATTGTTCGGACAAAGTGCATGCATGTTTTCCATGAGCATTGCATTGCTCAATGGCTTAAGCAATGTCACGTTACCAATCGATTGTATTCGTGTCCCTTGTGTCGTTTACAAATTCAATGA 630 0.3556 MSSIESYSIHVEESQHIVPQSSCLLEYFYINLHHFHSTSLNHYFFIIPRKILCDYDDFESIDPDSITRTYLHNTFSCVPISSEVLEQALLLMSDNARYMNTVNIERYSLLEMDVFIRTTSNEGMNVIDDQNASITTLLSLLEKVKLDDIICSMEQCAICLEEFCHESKPDIVRTKCMHVFHEHCIAQWLKQCHVTNRLYSCPLCRLQIQ 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01031 209 CDD RING-H2 156 205 - -
Tsu01g01031 209 SUPERFAMILY RING/U-box 155 208 - -
Tsu01g01031 209 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 82 208 - -
Tsu01g01031 209 PANTHER RING ZINC FINGER PROTEIN-RELATED 82 208 - -
Tsu01g01031 209 ProSiteProfiles Zinc finger RING-type profile. 156 205 IPR001841 -
Tsu01g01031 209 SMART ring_2 156 204 IPR001841 -
Tsu01g01031 209 Pfam Ring finger domain 155 205 IPR001841 -
Tsu01g01031 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 209 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01031 Tsu-Chr1 9478387 9479016 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01031 137 208 C3H Transcription Factor Family AT4G12190 39.726 1.30e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01031 - - mtr:MTR_1g029910 203.371