Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01030 ATGAGCGACACCGCTAGGTATATGAACGCCGTCAACATAGAAAGATATACTATATTGGAGATGGATGTGTTCGTTAGAACAACGTCAAGTGATGGTGTTAATGATATTGATGACCAAAATGCATCAATTACAACCCTTTTGAATTTGCTGGAGAAGGTGAAGTTGGACGACATTACTAGCTCAATAGAACAATGTGCAATTTGCTTAGAGGAATTTTGCAATGAATCAAAACTAGAGATTGTTCGTACCAAGTGCATGCATGTTTTCCATGAGCATTGCATTGCTCGATGGCTTAAGCGATGCTACATTACCCATCAATTATATTCATGTCCCTTGTGTCGTTCACAAATTCAATGA 357 0.3838 MSDTARYMNAVNIERYTILEMDVFVRTTSSDGVNDIDDQNASITTLLNLLEKVKLDDITSSIEQCAICLEEFCNESKLEIVRTKCMHVFHEHCIARWLKRCYITHQLYSCPLCRSQIQ 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01030 118 ProSiteProfiles Zinc finger RING-type profile. 65 114 IPR001841 -
Tsu01g01030 118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 118 IPR013083 -
Tsu01g01030 118 SMART ring_2 65 113 IPR001841 -
Tsu01g01030 118 PANTHER RING ZINC FINGER PROTEIN-RELATED 16 117 - -
Tsu01g01030 118 SUPERFAMILY RING/U-box 64 117 - -
Tsu01g01030 118 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 16 117 - -
Tsu01g01030 118 Pfam Ring finger domain 64 114 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01030 Tsu-Chr1 9469486 9469842 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01030 49 117 C3H Transcription Factor Family AT4G12190 38.356 3.96e-10 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01030 - K16281 mtr:MTR_1g029860 117.472