Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01029 ATGTCGTCCTCTAGTGAAACCTATTCCATCCATATTGAAGAATCTCAACCCACCATGTCACAAAGTCTTTGTGCAATTGAATCTTTCTACGTTAGACTTCACCACTTCCACTCCAATTCATTAAACCATTATTTCTGTGTCATTCCTCGTAACATCTTATgtgattataataattttgattccATGGATCCTGATAGTTTTACTAGTACCTTTTTGCGTGATATTTTCTCGACCGTGCATATTTCTTCTGAAGTGTTGGAACAAACTCTACATCGTATGAGTGACTACGCAAGGTATATGAATACCAACAACTCCGAAGGATATCATATATTGGAGATGGATGTGTTCGTTAGTACAACATCGAATGATGGTGAGAATGGTACTGATGACGAAAACGAATCTATTACGACTCTTGTAAGTTTGTTGGAGAAAGTTAATTTGGATGATATTACTAGTTCAAATGAACAATGTGCAATTTGTTTAGAGGAATTTTGCGATGAATCAAAACCAAAGATTGTTCGTACCAAGTGCATGCATGTTTTCCATGAGCATTGCATTGTTCGGTGGCTTAAGCAATGCGGCATTACTAGTGGATTATATTCGTGTCCTTTGTGtcgtttcaaatttcaatga 633 0.3491 MSSSSETYSIHIEESQPTMSQSLCAIESFYVRLHHFHSNSLNHYFCVIPRNILCDYNNFDSMDPDSFTSTFLRDIFSTVHISSEVLEQTLHRMSDYARYMNTNNSEGYHILEMDVFVSTTSNDGENGTDDENESITTLVSLLEKVNLDDITSSNEQCAICLEEFCDESKPKIVRTKCMHVFHEHCIVRWLKQCGITSGLYSCPLCRFKFQ 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01029 210 Pfam Ring finger domain 156 206 IPR001841 -
Tsu01g01029 210 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 46 207 - -
Tsu01g01029 210 SUPERFAMILY RING/U-box 143 209 - -
Tsu01g01029 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 210 IPR013083 -
Tsu01g01029 210 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 46 207 - -
Tsu01g01029 210 SMART ring_2 157 205 IPR001841 -
Tsu01g01029 210 ProSiteProfiles Zinc finger RING-type profile. 157 206 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01029 Tsu-Chr1 9461760 9462392 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01029 154 207 C3H Transcription Factor Family AT3G58720 46.296 2.88e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01029 - - mtr:MTR_1g029910 189.889