Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01027 ATGACGTCATCTAAAGTCAACAAGAAATTAGTGTTTGATTCAGAAGAAGCTTTAGCAACTGTTAATGATCTAAGAACAACCTTTGATTCTGGTAAAACTCAAAGCTATGAATGGAGATTTTCTCAATTAAAAGCACTTTTGGAGTTAACTGAACAAAAAGAGCAAGAGATTGTTAAAGCTCTGTACTCTGACTTATCCAAATCTGAAGCTGAATCATTCATCCAAGAGATTGCTATGTTGAAAAACTCATGTAAAACTGCAATCAAGGAATTGAAGCATTGGATGGCTCCAGAAAAGGTTAAAACGTCACTCACAACATTTCCTTCTTCAGCTGAAATCGTATCTGAACCACTTGGAGTTGTTTTGGTCATCTCTGCATGGAACTATCCATTTTTGCTATCACTTGATCCAGTCATTGGAGCTATTGCAGCCGGTAATGCTGTGGTCTTAAAACCATCAGAACTTGCTCCAGCCACATCATCATTGCTGGCGAAACTACTAGGGGAATACATGGATAACTCATCTATAAGAGTTGTTGAGGGAGCAGTTGAGGAAACATCTGCATTATTGCAACAAAAGTGGGACAAAATTTTCTACACAGGTAATGGAAAAGTGGCACGCATAGTGATGGCCGCTGCTGCTAAGAACCTTACACCTGTTGTGCTGGAGCTTGGAGGAAAATCACCGGTTATTGTTGATTCAAATTCGAATATCAACTTACAGGTAGCAACTAGAAGGATAATTGCTGGAAAATGGGGTTGCAATAATGGACAAGCTTGCATTTCTCCAGATTATATTATAACTACAAAAGACTATGCTCCTAAGTTGGTGGATGCACTGAAGACTGAATTGGAGAGTTTTTATGGAAAGAATCCATTGGAATCAAAAGATTTGTCCCGTATTGTAAACTCGAACCACTTTGCTCGCTTGTCAAAGCTTTTGGATGATGATAAAGTTGTTGGTAAGATTGTTTATGGAGGTGAAAAGGATGAAAGCAAATTGAGGATTAGCCCTACTATTCTGTTGGATGTTCCGCGAGATTCTCTGATAATGAGTGAGGAGATATTCGGTCCATTACTTCCCATCATCACGGTTGATAAACTAGAAGAAAGCTTTAACGTGATAAATTCAGCACCAAAGCCTCTTGCGGcatatttatttacaaataataaGAAACTCAAGGAGCGGTTCGTTAAGACTGTTTCTGCCGGTGGTGTGGTCATCAATGACACATCTCTAcatCTTGCAGTACATACTTTGCCTTTTGGAGGAGTAGGAGACAGTGGAATTGGTGCATACCATGGAAAATTCTCATTTGATGCATTTAGCCACAAAAAAGCAGTTTTGTATCGCAGCTTTTTTGGTGATGCTTCTATAAGGTATCCACCATATACCAAGACAAAGATGAGATTTTTGAAGGCTCTCATGACTGGTGGCTTACTAGCTATAGTAAATGCCATATTTGGAAAGTCCTAG 1476 0.3875 MTSSKVNKKLVFDSEEALATVNDLRTTFDSGKTQSYEWRFSQLKALLELTEQKEQEIVKALYSDLSKSEAESFIQEIAMLKNSCKTAIKELKHWMAPEKVKTSLTTFPSSAEIVSEPLGVVLVISAWNYPFLLSLDPVIGAIAAGNAVVLKPSELAPATSSLLAKLLGEYMDNSSIRVVEGAVEETSALLQQKWDKIFYTGNGKVARIVMAAAAKNLTPVVLELGGKSPVIVDSNSNINLQVATRRIIAGKWGCNNGQACISPDYIITTKDYAPKLVDALKTELESFYGKNPLESKDLSRIVNSNHFARLSKLLDDDKVVGKIVYGGEKDESKLRISPTILLDVPRDSLIMSEEIFGPLLPIITVDKLEESFNVINSAPKPLAAYLFTNNKKLKERFVKTVSAGGVVINDTSLHLAVHTLPFGGVGDSGIGAYHGKFSFDAFSHKKAVLYRSFFGDASIRYPPYTKTKMRFLKALMTGGLLAIVNAIFGKS 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01027 491 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 222 229 IPR029510 GO:0016491
Tsu01g01027 491 CDD ALDH_F3FHI 20 450 - -
Tsu01g01027 491 PANTHER ALDEHYDE DEHYDROGENASE 4 491 IPR012394 GO:0006081
Tsu01g01027 491 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 226 428 IPR016163 GO:0016620
Tsu01g01027 491 Pfam Aldehyde dehydrogenase family 13 448 IPR015590 GO:0016491
Tsu01g01027 491 PANTHER ALDEHYDE DEHYDROGENASE 4 491 - -
Tsu01g01027 491 PIRSF ALDH 3 485 IPR012394 GO:0006081
Tsu01g01027 491 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 25 446 IPR016162 GO:0016491
Tsu01g01027 491 SUPERFAMILY ALDH-like 20 463 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01027 Tsu-Chr1 9430649 9438858 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01027 12 491 Aldehyde Dehydrogenase Gene Family AT4G34240 68.750 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01027 K00128 - gmx:100816594 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01027 01 9430649 9438858 Tsu01g01027 01 9430649 9438858 ECH