Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01023 ATGTCAGAGTCTCTCTCTCCTGAACAACAAAGATCCATTTATTCTGATTCTCAGCCCATGGAACACAATGAGGAAACAGGAATGGACGATTCAGAATTTACAATGGCAACAGTTGCTAATTTTTTGGAGCAACTGCACGCCAACATGTCATCACCACATGAGAAAGAACTTATAACAGGACGATTATTAGGTGTTTCCAGGAGAAGAAAGGATGCTAGAGCACTTATTGGTTCTCATGCCCAAGCCATGCCATTGCTCATAAACATTCTCAGAAATGGAACCCCTCCTGCAAAAGTTAATGTAGCTTCCACTCTTAGTATCCTGTGCAAAGATGAAGACTTGAGGTTAAAAGTACTTCTTGGTGGTTGTATCCCACCATTACTGTCAGTTTTAAAATATGAGTCCACTGATGCCAGGAAGGCAGCAGCTGAAGCAATATATGAAGTTTCCTCAGGTGGTCTTTCAGATGATCATGTTGGTATGAAAATTTTTGTTACAGAAGGTGTAGTTCCAACTTTATGGAATCAACTAAATCGAAAGAACAAGGAAGACAAAGTTGTGGAGGGTTTTATTACCGGAGCATTAAGAAATCTATGTGGGGAAAAAGATGGTTATTGGAAAGCAACATTAGAAGCTGGAGGTGTGGATATCATTGTGGGTCTCTTGTCTTCAGATAATTCTTTTTCTCAGTCGAATGCAGCTTCCCTGCTGGCACGTTTAATGCTGGCTTTCAGTGATAGCATCCCCAAAGTAATAGACTCTGGAGCAGTCAAAGTTTTACTTCGACTTATTGGTCAGAAAAATGACATTTCTGTGCGAGCCAGTGCTGCCGATGCCCTAGAGGCTCTTTCTTCAAAGTCTACCAAGGCTAAAAAGGCTATTGTTAATGAAGATGGTGTTCCAATCCTTATCGGAGCTATTGTTGCTCCTTCAACAGAATGTATGCGAGGTGATGGTGGTCGGGCCTTGCAAGAGCATGCAACTCGAGCTTTAGCAAACATCTACGGGGGCATGTCTGCTTTAATATTATATCTTGGAGAACTTTCCCATTCTCCTCGCCTTGCCGCACCAGTTGGTGATATAATTGGCGCACTTGCTTATGCACTCATGGTCTTTGTGGAAAACCTTGATGTTGATGAGGAACATTTTGATGCAACTCAGATAGAGGATAAACTAGTAACTCTTTTGAAGCCTAGAGACAACAAGCTGATTCAAGAGCGTGTTCTCGAGGCCATGGCTAGCCTTTATGGAAATGTCTATCTCTCGAAGTGGCTCATTCAAGCAGATTCAAAAAAGGTTCTCATTGGACTTATAACTATGGCTGCTCCTGATGTGCAAGAGTATCTGATACTTACACTGACAAGCTTGTGTTGTGAAAGGATTGGAATATGGGAGGCCATAAAAAAACGAGAAGGTATCCAATTGCTGATATCATTGGTGGGATTATCCAGTGAGCAGCATCAAGAGTACTCAGTTCAATTGCTAGCGATCTTAACTCACCAGGTTGATGACAGCAAATGGGCAATCACTGCTGCTGGAGGGATTCCACCATTGGTGCAGTTGTTGGAGACGGGATCACAAAAAGCAAGAGAGGAAGCAGCTAATGTTCTTTGGAGTTTGTGCTGCCACAGTGAAGATATACGTGCCTGTGTTGAAAGTGCTGGAGCTATACCAGCATTTTCGTGGCTTCTCAAGAGTGGTGGATCAAAAGGACAAGAAGCTTCTGCCATGGCACTGACAAAGCTTGTCCGAGTAGCTGATGCTGCCACAATTAACCAGCTATTAGCATTGCTCCTAGGGGACTCTACAAGCTCGAAGGCCCATATAATTCGGGTTTTAGGTCATGTGCTTTCTATTGCTTCACAGAAGGATCTCCTTCAGAAGGGATCTGCAGCCAATAAAGGACTGAGTTCTCTTGTTCAAGTTCTCAATTCATCAAATGCGGAAACCCAAGAATATGCAGCTTCAGTCCTTGCCGATTTATTTATCACAAGACAAGACATTTGTGATAGTCTTGCAACGGATGAGATCGTTCTTCCTTGCATGATGAAGCTTTTGTGTAGCAAAACTCAAGGTGTTGCCACTCAGTCTGCTCGAGCCTTATGTGCTCTGTCTCGTCCAACCAAGAACAAAGCTGCAAATATGATCTCTTATATTGTAGAGGGTGATGTTGAGCCACTAATCAAATTAGCTAAATCATCCTCTGTTGATGCTGCTGAAACTGCTGTTGCTGCATTGGCCAATCTTCTCTTTGATCCTTTTATTGCCTCTGAAGCTCTAGCTGAAGATGTTGTTTCAGCTTTAACAAGAGTTCTGGCAGAAGGAACCTCGGAAGGTAAACAAAATGCATCACGTGCACTTCATCAATTACTGAAGCAGTTTCCTGTAGGTGACGTTCTCAAGGGGAATGCTCAATGCCGTTTCACTGTGCTTGCGCTTGTTGATTCATTAAGAGCTATGGATCTGGATGGAACTGATGCTGCAGATACTTTAGGAGCAATTGCACTGCTAGTCAGGACTAAACAGGGTGTCAACTTTACTTACCCTCCGTGGTTAGCTCTGGGTGAAATACCATCAAGCTTAGAACTTCTCATCTACTGTTTGGCTGAGGGACCTCCCCTTGTGCAAGACAAGGCAATCGAAATTCTCTCTAGACTTTGTGGGAATCAGCCAGCTGCTCTTGGTGATTTATTATTTGCTAATTCCAGATCCATTGATTCATTGGCTAATAGAATAATAAACTCCTCAAGTTCAGAAGTGAAAGTTGGTGGAGCTGCCTTACTAATTTGTGCGGCAAAGGAGAAGAAAGGGCTTTCAATGGATTCACTCGACTCTTCTGGTTATCTAAAGCCACTAATATATTCATTAGTTGATATGGTGAAGCAGAGTTGTAGCTGTTCTTCATTAGATATTGAAGTATTTGCCACTAAAGATTTTATGGAGAAGAATGCATTTCAAGAAGTTGACGTGTTTGATATTCCTGATCCGGCTACAGTCTTGGGAGGTACTGTTGCCCTTTGGTTGCTCTCAGTTATTGCTTCTTTTCATTCGAAGAGCAAGCTCACAGTTATGGAAGCTGATGGGCTTGAAGCTCTCTGTAACAAACTTGCGAGACATACTTCAAATCCACAGAAAGAATATGAGGATACTGAAGGAATATGGATCAGTGCCTTGTTCTTGGCCATTTTGTTTAAAGATGCAAACATCATTCTATCACCTGCAACAATGAATATTATACCTACTATAGCTCTTCTGCTAAGATCCGACGAAgtaattgataaatattttgCTGCCCAGGCTATGGCTAGTCTCGTTTCTAATGGTAACAGGGGGATAAATCTTGCCATTGCAAATTCTGGTGCTGTTGCTGGATTGATAACTATTATTGGGCATATCGAATCAGATATGCCAAATCTCGTGGCTTTGTCAGAAGAATTTTCTTTGGTGCGAAACCCTGATCAAGTAGTTTTGGATACCctttttgaaattgaagatgTAAGATTAGGGTCTACTGCCCGGAAATCTATACCCCTCTTGGTGGACCTCTTAAGACCAATACCAGAAAGGCCTAATGCTCCACCAGTTGCTGTTAGACTCTTGATATCCATTGCAGATGGAAGTGATGCAAACAAATCAATTCTGGCAGAAGCTGGAGCTCTGGAAGCTTTGAACAAATACCTGTCATTGAGCCCTCAAGACTCAACTGAGACTTCTATTACAGAGTTACTtagaatattattttgtaaCTCTGACCTCATTAATCATGAAGCATCAACAAGTTCATTGAATCAACTCATAGCTGTTTTGCGTCTTGGATCAAGAAATTCTAGATATAGTGCAGCAAGGGCAATTCATGAACTCTTTGACGCCGACTATATCAGAGATTCAGAATTAGCTAAACAGGCCATTCAGCCATTGGTTGACATGCTTAACACAACATCAGGGAATGAGCAGGAAGCTGCTCTCATGGCCTTGATCAAGTTAACATCAGGAGATTCATCAAAAGCATCTGTTTTTACTGATGTGGAAGGGAATCCACTTGAAAGTTTATACAAAGTATTGTCTTCTGCTTCTTCTTTGGAACTGAAGACCCATGCCGCACATCTCTGCTATGCTCTTTTTGGTAATAGCAAGATCAGAGCAAACCCAGTTGCCTCAGAATGTCTGAAACCCCTTATATCACTAATGCAGTCTGGTTCTGCGACAGCAATAGAATACGGGGTTTGTGCTTTTGACAGATTGTTGGAAGATGAACAGCAGGTAGAGCTTGCAGCGGCCTATAATGTTGTGGATCTCCTTGTTGGCTTGGTTTCTGGTGGGAACTATCAGCTTATTGAGGCCACTATATCTGCTCTAATTAAATTGGCAAAAGACAGGACTCCTAGCAAACATGACATGGTCAAAGCTGGCATTATTGATAATTGTCTCGAGCTATTTCAATCAGCACCTAGCTCATTATGTTCCACAATTGCCGAGCTTTTTCGCATTTTAACCAATAGTGTTGCAATTGCTAGAAGTTCAGATGCTGCAGAAATCGTAGAACCCCTTTTTAATGTTTTGCTCCGTCAGGACTTCAACATATGGGGACAGCACAGTGCCTTACAAGCACTAGTAAATATATTGGAGAAACCACAAAGTCTCGCTTCCTTAAAGCTTACTCCTAGCCAAGTCATTGAACCCTTGATTTCTTTTCTCGAATCCCCATCCCTAGCTATTCAGCAGCTTGGCACAGAACTGTTATCTCATCTTCTTGCACAGGAACACTTTCAGCAAGATATTACAACAAAGAATGCAGTTGTGCCCCTTGTACGGCTTGCAGGGATTGGAATTTTAAATTTACAGCAAACAGCAATAAAAGCATTGGAAAAAATTTCCACGAGCTGGCCAAAGGCCGTTGCTGATGCGGGAGGTATTTTTGAGCTTGCAAAAGTTATTATTCAAGATGATCCTCAGCCACCACATGCACTCTGGGAATCTGCTGCTTTAGTTCTCTCTAATGTCTTACGTTCCAATACTGATTACTGTTTTAAAGTTCCTGTGGTGGTTCTTGTAAAACTCTTGCACTCAACACTTGAGAGTACAATTAGCATAGCGCTAAATGCTTTAATAGTTTATGAAAGAAGCTATGGTTCAAGTGCTGAAGAGATGATGGAAGCTGGAGCTTTGGATGCTCTGCTGCACCTTATAAGATCTCATCAATGCGAAGAAGCATCTGGTAGCTTACTTGAAACTTTATTTAACAATGTGAGAATACGGGAGATGAAGATATCTAAGTATGCTATAGCGCCTTTATCCCAATATCTGTTAGATCCACATACCAGATCACAGTCTGGCAAGCTTCTTGCTGCTTTAGCTCTGGGAAATCTTTCCCAGCATGAACGACATGCTAGAGCTAGTGACTCCGTATCTGCATGTCGTGCATTGATAAGTTTACTAGAAGATCAGCCAACTGAAGAAATGACAATGGTGGCTATATGCGCATTACAAAACTTTGTCATGAAGAGCAAGTCCAATAGACGTGCTGTTGCAGAAGCTGGGGGCATACTGGTGATTCAGGAATTGCTACTGTTTCCAAATACAGAAGTTGCTGGGCAAGCAGCTCTAttgatcaaatttttgttttctacCCACACATTACAAGAGTATGTGTCAAATGAGCTGATCAGATCTTTGACAgCTGCACTCGAAAGAGAGTTATGGTCGACTGCCACAATCAACGAGGAGGTTTTGAAAACACTGCATGTGATATTCATCAACTTTCCTAAGCTCCACATATCTGAAGCAGCAACCCTTTGCATTCCTCATTTGGTAGGGGCCCTTAAATCTGGGAGTGAAGCGGCTCAAGACTCTGTACTTGACACCTTTTTCTTGCTAAAACAATCATGGTCGACCATGCCAATAGATATAGCAAAATCTCAAGCCATTATTGCCGCTGAAGCCATCCCCATCTTGCAAATGCTCATGAAAACCTGCCCACCAAGTTTCCATGAAAGGGCAGATACACTTCTGCACTGCTTACCAGGTTGTTTGACTGTCACCATTAAACGTGGAAACAATCTCAAGCAAAGTATGGGAAGCACCAATGCATTTTGCCAGTTGACAATAGGGAATGGCCCTCCAAAACAAACCAAGGTAGTGAACCATAGTACTTCTCCGGAATGGAAAGAAGGTTTCACATGGGCGTTTGATGTACCTCCCAAGGGCCAAAAACTCCATATCGTATGTAAAAGCAAGAATACTTTTGGAAAGtcaAGTCTTGGAAGAGTCACCATCCAAATTGATAAAGTAGTTACGGAAGGGGTTTATAGTGGATTATTCAGTCTTAATCATGATAGCAACAAAGATGGTTCTTCCCGAACACTTGAAATTGAGATTTTATGGTCCAACAGAATTTCTAATGATGACATTTGA 6411 0.4163 MSESLSPEQQRSIYSDSQPMEHNEETGMDDSEFTMATVANFLEQLHANMSSPHEKELITGRLLGVSRRRKDARALIGSHAQAMPLLINILRNGTPPAKVNVASTLSILCKDEDLRLKVLLGGCIPPLLSVLKYESTDARKAAAEAIYEVSSGGLSDDHVGMKIFVTEGVVPTLWNQLNRKNKEDKVVEGFITGALRNLCGEKDGYWKATLEAGGVDIIVGLLSSDNSFSQSNAASLLARLMLAFSDSIPKVIDSGAVKVLLRLIGQKNDISVRASAADALEALSSKSTKAKKAIVNEDGVPILIGAIVAPSTECMRGDGGRALQEHATRALANIYGGMSALILYLGELSHSPRLAAPVGDIIGALAYALMVFVENLDVDEEHFDATQIEDKLVTLLKPRDNKLIQERVLEAMASLYGNVYLSKWLIQADSKKVLIGLITMAAPDVQEYLILTLTSLCCERIGIWEAIKKREGIQLLISLVGLSSEQHQEYSVQLLAILTHQVDDSKWAITAAGGIPPLVQLLETGSQKAREEAANVLWSLCCHSEDIRACVESAGAIPAFSWLLKSGGSKGQEASAMALTKLVRVADAATINQLLALLLGDSTSSKAHIIRVLGHVLSIASQKDLLQKGSAANKGLSSLVQVLNSSNAETQEYAASVLADLFITRQDICDSLATDEIVLPCMMKLLCSKTQGVATQSARALCALSRPTKNKAANMISYIVEGDVEPLIKLAKSSSVDAAETAVAALANLLFDPFIASEALAEDVVSALTRVLAEGTSEGKQNASRALHQLLKQFPVGDVLKGNAQCRFTVLALVDSLRAMDLDGTDAADTLGAIALLVRTKQGVNFTYPPWLALGEIPSSLELLIYCLAEGPPLVQDKAIEILSRLCGNQPAALGDLLFANSRSIDSLANRIINSSSSEVKVGGAALLICAAKEKKGLSMDSLDSSGYLKPLIYSLVDMVKQSCSCSSLDIEVFATKDFMEKNAFQEVDVFDIPDPATVLGGTVALWLLSVIASFHSKSKLTVMEADGLEALCNKLARHTSNPQKEYEDTEGIWISALFLAILFKDANIILSPATMNIIPTIALLLRSDEVIDKYFAAQAMASLVSNGNRGINLAIANSGAVAGLITIIGHIESDMPNLVALSEEFSLVRNPDQVVLDTLFEIEDVRLGSTARKSIPLLVDLLRPIPERPNAPPVAVRLLISIADGSDANKSILAEAGALEALNKYLSLSPQDSTETSITELLRILFCNSDLINHEASTSSLNQLIAVLRLGSRNSRYSAARAIHELFDADYIRDSELAKQAIQPLVDMLNTTSGNEQEAALMALIKLTSGDSSKASVFTDVEGNPLESLYKVLSSASSLELKTHAAHLCYALFGNSKIRANPVASECLKPLISLMQSGSATAIEYGVCAFDRLLEDEQQVELAAAYNVVDLLVGLVSGGNYQLIEATISALIKLAKDRTPSKHDMVKAGIIDNCLELFQSAPSSLCSTIAELFRILTNSVAIARSSDAAEIVEPLFNVLLRQDFNIWGQHSALQALVNILEKPQSLASLKLTPSQVIEPLISFLESPSLAIQQLGTELLSHLLAQEHFQQDITTKNAVVPLVRLAGIGILNLQQTAIKALEKISTSWPKAVADAGGIFELAKVIIQDDPQPPHALWESAALVLSNVLRSNTDYCFKVPVVVLVKLLHSTLESTISIALNALIVYERSYGSSAEEMMEAGALDALLHLIRSHQCEEASGSLLETLFNNVRIREMKISKYAIAPLSQYLLDPHTRSQSGKLLAALALGNLSQHERHARASDSVSACRALISLLEDQPTEEMTMVAICALQNFVMKSKSNRRAVAEAGGILVIQELLLFPNTEVAGQAALLIKFLFSTHTLQEYVSNELIRSLTAALERELWSTATINEEVLKTLHVIFINFPKLHISEAATLCIPHLVGALKSGSEAAQDSVLDTFFLLKQSWSTMPIDIAKSQAIIAAEAIPILQMLMKTCPPSFHERADTLLHCLPGCLTVTIKRGNNLKQSMGSTNAFCQLTIGNGPPKQTKVVNHSTSPEWKEGFTWAFDVPPKGQKLHIVCKSKNTFGKSSLGRVTIQIDKVVTEGVYSGLFSLNHDSNKDGSSRTLEIEILWSNRISNDDI 2136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01023 2136 PANTHER - 13 2134 - -
Tsu01g01023 2136 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 255 299 IPR000225 GO:0005515
Tsu01g01023 2136 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2007 2113 IPR035892 -
Tsu01g01023 2136 Gene3D - 632 823 IPR011989 -
Tsu01g01023 2136 SUPERFAMILY ARM repeat 72 309 IPR016024 -
Tsu01g01023 2136 SUPERFAMILY ARM repeat 443 795 IPR016024 -
Tsu01g01023 2136 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 513 555 IPR000225 GO:0005515
Tsu01g01023 2136 SMART arm_5 111 151 IPR000225 GO:0005515
Tsu01g01023 2136 SMART arm_5 544 584 IPR000225 GO:0005515
Tsu01g01023 2136 SMART arm_5 156 200 IPR000225 GO:0005515
Tsu01g01023 2136 SMART arm_5 1290 1330 IPR000225 GO:0005515
Tsu01g01023 2136 SMART arm_5 244 285 IPR000225 GO:0005515
Tsu01g01023 2136 SMART arm_5 1376 1416 IPR000225 GO:0005515
Tsu01g01023 2136 SMART arm_5 712 751 IPR000225 GO:0005515
Tsu01g01023 2136 SMART arm_5 69 110 IPR000225 GO:0005515
Tsu01g01023 2136 SMART arm_5 1459 1499 IPR000225 GO:0005515
Tsu01g01023 2136 SMART arm_5 623 663 IPR000225 GO:0005515
Tsu01g01023 2136 SMART arm_5 287 336 IPR000225 GO:0005515
Tsu01g01023 2136 SMART arm_5 665 706 IPR000225 GO:0005515
Tsu01g01023 2136 SMART arm_5 502 542 IPR000225 GO:0005515
Tsu01g01023 2136 SMART arm_5 1835 1875 IPR000225 GO:0005515
Tsu01g01023 2136 SMART arm_5 752 792 IPR000225 GO:0005515
Tsu01g01023 2136 SMART arm_5 1207 1248 IPR000225 GO:0005515
Tsu01g01023 2136 SMART arm_5 1747 1791 IPR000225 GO:0005515
Tsu01g01023 2136 SMART arm_5 202 242 IPR000225 GO:0005515
Tsu01g01023 2136 SMART arm_5 458 500 IPR000225 GO:0005515
Tsu01g01023 2136 SMART arm_5 1417 1457 IPR000225 GO:0005515
Tsu01g01023 2136 Gene3D - 35 365 IPR011989 -
Tsu01g01023 2136 Gene3D - 855 1290 IPR011989 -
Tsu01g01023 2136 Gene3D - 1611 2008 IPR011989 -
Tsu01g01023 2136 SUPERFAMILY ARM repeat 1588 2006 IPR016024 -
Tsu01g01023 2136 SUPERFAMILY ARM repeat 1177 1545 IPR016024 -
Tsu01g01023 2136 Pfam Armadillo/beta-catenin-like repeat 506 541 IPR000225 GO:0005515
Tsu01g01023 2136 SUPERFAMILY ARM repeat 856 1314 IPR016024 -
Tsu01g01023 2136 Gene3D C2 domain 2009 2134 IPR035892 -
Tsu01g01023 2136 SUPERFAMILY ARM repeat 322 461 IPR016024 -
Tsu01g01023 2136 MobiDBLite consensus disorder prediction 1 26 - -
Tsu01g01023 2136 MobiDBLite consensus disorder prediction 1 21 - -
Tsu01g01023 2136 SMART C2_3c 2009 2105 IPR000008 -
Tsu01g01023 2136 ProSiteProfiles C2 domain profile. 1989 2106 IPR000008 -
Tsu01g01023 2136 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 13 2134 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Tsu01g01023 2136 Gene3D - 366 631 IPR011989 -
Tsu01g01023 2136 Gene3D - 1291 1605 IPR011989 -
Tsu01g01023 2136 Pfam C2 domain 2009 2108 IPR000008 -
Tsu01g01023 2136 CDD C2 2010 2100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01023 Tsu-Chr1 9362850 9374989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01023 473 790 U-box Gene Family AT3G46510 23.750 2.63e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01023 - - aprc:113846793 3556.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01023 01 9362850 9374989 Tsu01g01023 01 9362850 9374989 ECH