Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01018 ATGATCTCCTCCGGTACTGGCCGTACTGTGGTGGTTGGTGTGAAGATGGAATCTAACAGTACTCATCATAGTACAGAGTTGCTTACTTGGTCTTTGGTTAATGTTGCTCAACCTGGTGATCTTATTCTTGCTCTTCATGTTCTCAGAAATGATGAAATTGTGAATCAAGATGGGAAATCTTCTCTGTTTTCTCTTGTCAAAGCATTTGATTCTGTTCTTTCTGGTTATGAAGGATTCTGCAATTTGAAACAGGTGGATCTGAAGCTAAAGATTTGCCGGGGTTCATCAGTGAGGCGAATTTTGGTTAGAGAAGCAAATGAATGTTGTGCAAGTCATGTTATAGTAGGAAAACCTCAAGGTCTTAGTAAAATTAGGCCATCTATTTCTATACATAAGTATTGTGCTAAGAAGCTATCTAAGGATTGCTGGGTTTTCGCTGTTGATAATGGGAAAGTTGTGTTCAAGAGAGATGGATCACCGGCTAATCACGCCAACTTAAaagGTTGCCAAATTGGGTTGTCCGGTTCGATTCAATGGAAATTCAGTAAAAGTTTAAAAGTACTAAATGACGATATGCACAGAGCAATGTTACTGGATTCATCTTACGGTGATAGTGATAAGAACTCATTGGCTATGGTGCCTGTAAAGGTAACTAATGCTGGTGTGAAAACTTTCCATGACAGAGAATCAAATTATTTGAAACCTGGTTGGCCACTACTTGGCAGAATTTCATCATCTGACAGGAAAGTTTCTGAAAGATCGTTGTCTCGTCGGGTTTCTGTGGTTCAATGGGCAATGCAGTTGCCCTCTAGAAACATTTCCTttaataaagataaatttttGGGTCTAGATAGCAAAAGTGGTGCTCTTGTTCCGGTGGATGCTGAAATAGGGACGGTTGCTTCACCTGATCGCAAATCGATAAGAGTTCCTAAAGAATTGGAGGGCTTTCATGAGAAATACTCATCTACTTGCAGATTGTTTAACTACCAAGAACTTGTATCAGCAACATCAAATTTCTTGCCTGAAAATTTGATCGGAAAAGGAGGAAGTAGTGAGGTTTACAGAGGCTGCCTTCCTGATGGAAAGGAATTAGCTGTTAAGATCTTGAAGCCTTCGGATGATGTTTTGAAGGAGTTTGTTTTAGAGATAGAAATTATCACTGCTTTGAATCACAAAAACATCATTTCCCTCATTGGATTCTGTTTTGAGGATGATAACCTTCTTTTAGTCTATGATTTCTTATCAAGGGGGAGTCTTGAACAAAACCTTCACGGTAAtaagaaaaatccaattgagtTTGGTTGGACTGAGAGATATAAGGTGGCGATGGGTGTTGCCGAGGCTTTGGAATATCTGCATAATAATGGCAACCAACCGGTGATCCATCGCGATGTAAAATCATCAAATGTGTTATTATCTGAGGATTTTGAACCACAGCTCTCTGACTTTGGACTCGCTAAATGGGCATCAACCTCATCATCATATATAACCTGCACTGATGTTTCCGGAACTTTTGGGTTTGTATTTCAACTTCCACATAACTGTACCATCACTTCTTTCTGCATAAATGTTGTAGGAAAACTTCGTAGTTGTAATGATTCTGAACTATGTATATCTATGGATTCTATGCAGTTACTTGGCTCCTGA 1650 0.3867 MISSGTGRTVVVGVKMESNSTHHSTELLTWSLVNVAQPGDLILALHVLRNDEIVNQDGKSSLFSLVKAFDSVLSGYEGFCNLKQVDLKLKICRGSSVRRILVREANECCASHVIVGKPQGLSKIRPSISIHKYCAKKLSKDCWVFAVDNGKVVFKRDGSPANHANLKGCQIGLSGSIQWKFSKSLKVLNDDMHRAMLLDSSYGDSDKNSLAMVPVKVTNAGVKTFHDRESNYLKPGWPLLGRISSSDRKVSERSLSRRVSVVQWAMQLPSRNISFNKDKFLGLDSKSGALVPVDAEIGTVASPDRKSIRVPKELEGFHEKYSSTCRLFNYQELVSATSNFLPENLIGKGGSSEVYRGCLPDGKELAVKILKPSDDVLKEFVLEIEIITALNHKNIISLIGFCFEDDNLLLVYDFLSRGSLEQNLHGNKKNPIEFGWTERYKVAMGVAEALEYLHNNGNQPVIHRDVKSSNVLLSEDFEPQLSDFGLAKWASTSSSYITCTDVSGTFGFVFQLPHNCTITSFCINVVGKLRSCNDSELCISMDSMQLLGS 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01018 549 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 4 509 - -
Tsu01g01018 549 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Tsu01g01018 549 ProSitePatterns Serine/Threonine protein kinases active-site signature. 461 473 IPR008271 GO:0004672|GO:0006468
Tsu01g01018 549 SUPERFAMILY Protein kinase-like (PK-like) 321 508 IPR011009 -
Tsu01g01018 549 Gene3D Transferase(Phosphotransferase) domain 1 415 510 - -
Tsu01g01018 549 Pfam Protein kinase domain 344 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01018 549 PANTHER OS01G0253100 PROTEIN 4 509 IPR045271 GO:0004714|GO:0006468
Tsu01g01018 549 CDD USP_Like 9 125 - -
Tsu01g01018 549 ProSiteProfiles Protein kinase domain profile. 340 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01018 549 Gene3D Phosphorylase Kinase; domain 1 305 414 - -
Tsu01g01018 549 SMART serkin_6 340 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01018 Tsu-Chr1 9317990 9322714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01018 320 509 Receptor kinase-like Gene Family AT5G56890 43.005 1.73e-43 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Tsu01g01018 Pkinase 1.4e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01018 - - aprc:113846853 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01018 01 9317990 9322714 Tsu01g01018 01 9317990 9322714 ECH