Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01014 ATGTCGAAGACAAAGTCATTTCAAGGCGTAAACGTCTTCATGTCGCGAAACCTAGTTCCGCCGGAAGTCTTCGATACTCTTCATGACGCCGTTAAAAATAACGGCGCTCAAATTCAACTCTGTTGCGATCCTTCCCGTAATGGTCCCAACGATTATCATATCATTTCCTGCAGCAAACACGAAAAATTTCAAGATCTTAAATCAAAGGGATGTAAAATGCTCGGTCCTAGATGCGTTCTTTTATGTGCTAAAGAACGAAGGGCTCTGCCTAAACAAGGCTTCACTTGTTGCTTTGCCATGGATGGTGTCAAAATACTTGCCTCTGGTTTTGATGCGGATGAGAAGGTTAAGATAGAAGAATTAGTGACTGAAATGGGGGGAGCTCTGCATACTAAACCGTCGTCAGATTTGAACTTTGTCATCGTGAAAAATGTTTTGGCACTAAAGTACAAGTGGGCATTGAATGTCCTGAAGAAACCAATAGTTACTTATGAATGGTTAAAGCAATGCTCAGATGAGCATCGTGTTGTTCCTCAAGAGTCATATAAGGTTCTTCCTTTCTCTGGGTTAAAGATCTGTGTGACTGGAATCTCAGCAGATAAGCGCAAAGAAATGGAAAAgcttattttacaaaatggtgGAAAATACTCTGCGGAACTGACAAAGAATTGCACACATTTGATTTGTGATGCTCCTGAAGGTGATAAGTATAAGGTGGCGAAACGTTGGGGTCACATTCATATTGTAACAATAAAATGGTTTGATCAATCTATTGCTCGAAGAGCATGTCTGAATGAGGAGTCCTACCCTGTTCAGAGTGGATCTTTGTCTTCACGTAAGGTGACAAGGCACTTAACTGTGCAACATAGCCAGGAAAAGGATATTGGGAAAATGCAATCTGGCTCATTCTCAAGAGCTGCGGATTCAAATATGTTAGTTTCTAATTGCGCCGAGTCGATGAATATAGATTCAGAAGCTACACAGTCACAACATACATCGTCTGTTtcaaatatttcattatttgttAAAGAGGCAGATGCTGAAGCACCTCCATTACAGACCAGCAatggattgaattttgatggTGCTGTTGCTAATGATTCGGAATCTGATGACAATGACCTGTACTTAGCAGAGTGCAGAATATCACTTGTTGGTTTTGAAGCTTCTGAAATGCGGAAGCTAGTTAATTTGGTGCGTAAAGGTGGAGGCTCTCGATACATGTCTTTGAATGATAAGTTGACACATATAGTAATTGGGAATCCTACAGAAATGGAAAAGAAGGATGTAAGGAGTATTGCTGCTCTAGGTGTCGTTTATGTTGTTAAAACCTCATGGCTTGAAGATTGTGACCGTGAAAAGAAACAAGTCCCTGTTCTTCGACGACACATTGCATCTGATCTTGTTCTTCCAAAAGTAAAAGGAGCGGTTAGTGGCATTGTGCCTGTGGATCAAAGTAAAAGCTCATGCTTTCGCAAAAGCTTCCAGACCGATCAGGTGGTGGGTATTAAGGACTTTGGAGTTACAATGCCAGAATCTTTGGAGAAAAACAAACAAGAGAAACACGATATGGGTATGAATGTTGTCACATTTGGTAAAGCATCGGGTAGAACTATGTTGCAAACTCAACTTCCTGATAAAAAGTTGAGGGTACAACAGATTACGCAACATGACTCCAATGTGCATGTGAAGTCAACAAATGTTTTCAAAGGGAAAACATTTTGTTTCTCAAATTTATTTCCTGAAGAAAGGAGAGGTGATATTGTTCAATggataaatcaagggggaggAGAGATAATAAGTGGGCAAACAAAACAGAGTATCCACTATACTATTGAATGCCATGGTGTAAAACCGTCGATAGGTGATTATGGAAGTACCTATATTTCCTGTCATTGGATACGAGCTTGTTTGGAGGATGGATCATTGCTGGATGTTGACAGTCATATTCTTTATTCTCCACTTCCCTGCCCTGTTCCTTTGCCTGGTTTTGAAAGCCTTTGGTTTTGTGTTTCACAATATGACGAGAAAGACAGAATTCTACTTCGGAACTTGTGTAAAGTTCTAGGAGCTAAATTTGCGAGTAAATTGACTCAGAAGGTGACACATTTATTGTGTAAATTCGCCAATGGACCCAAGTACGAGGCTTCTTGTAAGTGGGGGATCCGATCAGTTACGTCCGAGTGGATATTTGAATGTGTTAAACAGAATGGAGTTATTGCCATAGATCAATTTTTACCCAAAGAAGTCACCACTCAAGACCGAGAGACAGGAGTTTGCACAGTGAGTCAATTTCCTACCCAGGCTGTTCGAATGATAAATGACATGCCGTCCCAGTTTCCAAGTCAATCACAAAGTATGAGAAACACAGCAAATCAAAATGTAGATAGTGGAGTTGACAATCATGGGACTCGTTCTAAAATATCAAGGATTAATAGCAAAAAGGCAAGGCTCATGGAAGAACCTGGCCTGTATGATAAGGTACCTTCTACAGTAAATCCAGGTATTCATGTCTCTGACTTGAATTTGTCTAAAGACAATATGCTCAAAGATGCTCGGGAGGCAACCCATGTTGTTCCTGATGTTGTTGCTGCAATTGAGGACTTGTTAGAGCAGACAAGCAAGATGCATGATCAGAGGTCCCCAGGGAATACAGGGTGTGAGAGAAGTATTTACCCATCTGATTGTTCAGTCGTTGGTGAAGACAATCCAAATCCTCATACTGTCTTTGGATTATCGAATCACTGGCTAAACAGAAACGGAAGAAACGATAATGATAATAGTGAGACTCCTCAAGACCGAAGAGCAGGAATGTATGATGCTTTTAGTGAAACACAAACAGAATCTCAGGTTGTTAGTTATGAAGAAGACTTGTCTGGAAGGCAAATGCTTATAGATAGAGTTTTAACTCGAAGTAGCATGCAGTGA 2928 0.3958 MSKTKSFQGVNVFMSRNLVPPEVFDTLHDAVKNNGAQIQLCCDPSRNGPNDYHIISCSKHEKFQDLKSKGCKMLGPRCVLLCAKERRALPKQGFTCCFAMDGVKILASGFDADEKVKIEELVTEMGGALHTKPSSDLNFVIVKNVLALKYKWALNVLKKPIVTYEWLKQCSDEHRVVPQESYKVLPFSGLKICVTGISADKRKEMEKLILQNGGKYSAELTKNCTHLICDAPEGDKYKVAKRWGHIHIVTIKWFDQSIARRACLNEESYPVQSGSLSSRKVTRHLTVQHSQEKDIGKMQSGSFSRAADSNMLVSNCAESMNIDSEATQSQHTSSVSNISLFVKEADAEAPPLQTSNGLNFDGAVANDSESDDNDLYLAECRISLVGFEASEMRKLVNLVRKGGGSRYMSLNDKLTHIVIGNPTEMEKKDVRSIAALGVVYVVKTSWLEDCDREKKQVPVLRRHIASDLVLPKVKGAVSGIVPVDQSKSSCFRKSFQTDQVVGIKDFGVTMPESLEKNKQEKHDMGMNVVTFGKASGRTMLQTQLPDKKLRVQQITQHDSNVHVKSTNVFKGKTFCFSNLFPEERRGDIVQWINQGGGEIISGQTKQSIHYTIECHGVKPSIGDYGSTYISCHWIRACLEDGSLLDVDSHILYSPLPCPVPLPGFESLWFCVSQYDEKDRILLRNLCKVLGAKFASKLTQKVTHLLCKFANGPKYEASCKWGIRSVTSEWIFECVKQNGVIAIDQFLPKEVTTQDRETGVCTVSQFPTQAVRMINDMPSQFPSQSQSMRNTANQNVDSGVDNHGTRSKISRINSKKARLMEEPGLYDKVPSTVNPGIHVSDLNLSKDNMLKDAREATHVVPDVVAAIEDLLEQTSKMHDQRSPGNTGCERSIYPSDCSVVGEDNPNPHTVFGLSNHWLNRNGRNDNDNSETPQDRRAGMYDAFSETQTESQVVSYEEDLSGRQMLIDRVLTRSSMQ 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01014 975 ProSiteProfiles BRCT domain profile. 182 271 IPR001357 -
Tsu01g01014 975 Gene3D BRCT domain 363 461 IPR036420 -
Tsu01g01014 975 Gene3D BRCT domain 97 185 IPR036420 -
Tsu01g01014 975 SUPERFAMILY BRCT domain 627 748 IPR036420 -
Tsu01g01014 975 MobiDBLite consensus disorder prediction 779 805 - -
Tsu01g01014 975 CDD BRCT 103 170 - -
Tsu01g01014 975 SUPERFAMILY BRCT domain 567 653 IPR036420 -
Tsu01g01014 975 Gene3D BRCT domain 31 94 IPR036420 -
Tsu01g01014 975 SUPERFAMILY BRCT domain 59 183 IPR036420 -
Tsu01g01014 975 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 7 962 - -
Tsu01g01014 975 Gene3D BRCT domain 186 272 IPR036420 -
Tsu01g01014 975 CDD BRCT_TopBP1_rpt2_like 662 737 - -
Tsu01g01014 975 Pfam twin BRCT domain 190 253 IPR001357 -
Tsu01g01014 975 Pfam twin BRCT domain 669 729 IPR001357 -
Tsu01g01014 975 SUPERFAMILY BRCT domain 372 458 IPR036420 -
Tsu01g01014 975 Gene3D BRCT domain 561 657 IPR036420 -
Tsu01g01014 975 Gene3D BRCT domain 664 756 IPR036420 -
Tsu01g01014 975 SMART BRCT_7 566 641 IPR001357 -
Tsu01g01014 975 SMART BRCT_7 97 174 IPR001357 -
Tsu01g01014 975 SMART BRCT_7 661 737 IPR001357 -
Tsu01g01014 975 SMART BRCT_7 184 261 IPR001357 -
Tsu01g01014 975 SMART BRCT_7 374 454 IPR001357 -
Tsu01g01014 975 Pfam BRCT domain, a BRCA1 C-terminus domain 566 648 IPR001357 -
Tsu01g01014 975 ProSiteProfiles BRCT domain profile. 564 651 IPR001357 -
Tsu01g01014 975 ProSiteProfiles BRCT domain profile. 372 464 IPR001357 -
Tsu01g01014 975 Pfam BRCA1 C Terminus (BRCT) domain 101 170 IPR001357 -
Tsu01g01014 975 ProSiteProfiles BRCT domain profile. 664 747 IPR001357 -
Tsu01g01014 975 CDD BRCT_TopBP1_rpt2_like 186 261 - -
Tsu01g01014 975 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Tsu01g01014 975 SUPERFAMILY BRCT domain 186 272 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01014 Tsu-Chr1 9243590 9258287 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01014 1 974 Core DNA Replication Machinery Family AT1G77320 50.049 0.0 918
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01014 K10728 - gmx:100804966 1429.85