Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01012 ATGGTTCATAGCCAAtccattttcttcttccttttcacCTTTTTCATAGCTTCTCATGCTGCTCCTCCTGCTGTAGAATCATGTCCTATGGATCTTAGCTATGTTGAAACCTTTCCATGGGACACATCAACATGCAGAGATCCAATAGACTCAGAACACTGTTGCCAATCTCTTCTTAGTCTCTTTGGTATAGGACTTGCAAAACATCTCAAAGAAACATCAATCTTTCAACTTCCAAGTGAAAACATTTCCACAGCATGTTTACAAGATTTCAAACTCAAACTTTCATCCTTAAAAATTCAACCATCATTAGTCCCTAGTTGTTTCCAAAACTCAACTCAATTTGTCACAAACACTTCAAGCTGTGCAGGTATATCAAACATCACAGATTGGAAACAAAAAGTTGGTATGTTAAGTCCTTTAGATACTTCTTGTAATGGTGATTTAAGTTCTGAAACTAGTTGCAATATTTGTACTGAAGCTGGTTTTAAAGTCACTGCTCAACTTAGAACTGTTGCACCAAAAAATTCAACCAAGtgtttttattattcagttttatatGCTATTGGTATTGTGAATCAATTTGGTCCTACAGATCCTGTTACAGCTGGTTGTATACTTGGTATGGCACTTTCATCTAAAGGGTcatcaaataatagaaaaatattgaaacttgtTTTTGGATTATTAGGTGCTGTTGTTGGTGTTATTCTAGCTTTTGTGTTGATTGTTATGTATAGAAAATGGAATAAGATGAGAAGAGAAAATCTTTATCATAGATCAGTTGAAAACAGTGTTAGAGATAGTGTTTTGCCTAATACTGGTGCTAAATGGTTTCATATATCAGAACTTGAAAAAGCTACAAATAAGTTTTCACAGAAGAATATGATTGGTCAAGGTGGTGATGGAGTTGTGTATAAAGGAACACTTTCTGATGGAACTTTAGTTGCAGTGAAAGAAATTTTTGATTTAGAAACAAGAGGTGATGAAGAGTTTTGTTATGAAGTTGAGATTATTAGCAAAATTAAGCATAGGAATCTTCTTGCTTTAAGAGGATGTTGTGTTACAAGTCATAGTGTTAAAGGTAAAAGAAGGTTTTTGGTTTATGATTATATGCCTAATGGAAGTTTAAGTTATCAATTATCAATTAATGGTGCTAATAAGTTAACTTGGCCACAAAGAAAGAATATTATTCTTGATGTAGCTAAAGGGCTAGCTTATTTGCATTATGAAATCAAGCCACCGATTTTTCATCGTGATATTAAGGCGACTAATATACTTTTGGACTCAAAAATGAAAGCAAAAGTTGCTGATTTTGGATTAGCAAAACAAGGTAATGAAGGACAATCTCATCTTACAACAAGAGTAGCAGGAACATATGGTTATTTAGCACCTGAGTATGCATTATACGGACAATTAACGGAGAAAAGTGATGTTTATAGTTTCGGAATTGTGATACTTGAAGTAATGAGTGGTAGAAAAGTTCTTGATACAATGAATTCACCTGTTGTTTTGATAACTGATTGGGCTTGGACACTTGCAAAAACAGGAAAAGTTGATGAAATATTTGATGAAGCAGTTAAAGATGAAGGACCAGAAAAAATTATGGAAAGATTTGTACTAGTTGGAATTCTTTGTGCTCATGCAATGGTTGCATTAAGACCTACTATTGCAGAAGCACTTAAGATGTTAGAAGGTGATATTGATATTCCTAATTTACCTGATAGACCTGTTCCACTTGGTCATGAATCTTTTCAATCTTCACTTTTGCAAGGAAGTGGAAGAACAACACCTTATACTTCATTTTATTCTACTTCAAATATTAGTACAATTAGTAGAAATTGA 1845 0.3247 MVHSQSIFFFLFTFFIASHAAPPAVESCPMDLSYVETFPWDTSTCRDPIDSEHCCQSLLSLFGIGLAKHLKETSIFQLPSENISTACLQDFKLKLSSLKIQPSLVPSCFQNSTQFVTNTSSCAGISNITDWKQKVGMLSPLDTSCNGDLSSETSCNICTEAGFKVTAQLRTVAPKNSTKCFYYSVLYAIGIVNQFGPTDPVTAGCILGMALSSKGSSNNRKILKLVFGLLGAVVGVILAFVLIVMYRKWNKMRRENLYHRSVENSVRDSVLPNTGAKWFHISELEKATNKFSQKNMIGQGGDGVVYKGTLSDGTLVAVKEIFDLETRGDEEFCYEVEIISKIKHRNLLALRGCCVTSHSVKGKRRFLVYDYMPNGSLSYQLSINGANKLTWPQRKNIILDVAKGLAYLHYEIKPPIFHRDIKATNILLDSKMKAKVADFGLAKQGNEGQSHLTTRVAGTYGYLAPEYALYGQLTEKSDVYSFGIVILEVMSGRKVLDTMNSPVVLITDWAWTLAKTGKVDEIFDEAVKDEGPEKIMERFVLVGILCAHAMVALRPTIAEALKMLEGDIDIPNLPDRPVPLGHESFQSSLLQGSGRTTPYTSFYSTSNISTISRN 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01012 614 Pfam SPARK 26 180 IPR043891 -
Tsu01g01012 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Tsu01g01012 614 CDD STKc_IRAK 297 566 - -
Tsu01g01012 614 Pfam Protein kinase domain 292 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01012 614 Gene3D Transferase(Phosphotransferase) domain 1 372 570 - -
Tsu01g01012 614 ProSiteProfiles Protein kinase domain profile. 291 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01012 614 SUPERFAMILY Protein kinase-like (PK-like) 276 591 IPR011009 -
Tsu01g01012 614 Gene3D Phosphorylase Kinase; domain 1 252 371 - -
Tsu01g01012 614 PANTHER OS01G0253100 PROTEIN 14 593 IPR045271 GO:0004714|GO:0006468
Tsu01g01012 614 SMART serkin_6 291 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01012 614 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 14 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01012 Tsu-Chr1 9232035 9234309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01012 26 596 Receptor kinase-like Gene Family AT1G11050 52.203 0.0 576
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Tsu01g01012 Pkinase 7.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01012 - - ccaj:109788171 946.036