Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01003 ATGGAGGATAAGATAGTGATGCTCAAGAAAGAGGTGGAAAGGTTGGATTTGAAGAGAGAGGAGGGTTCATTGGTGGGTAATGAAAATGAGGTTCAAAAGGATACGCTTTTGGAGTTGCGGCATCTTCTTCATAGTAAAGATAGTTTGTTATTTCAACAGCCACGGTCCCGTTGGTTGAAAGAAGGGGATGCGAATACCGGGTATTTTCATTCTTGCATAACAAGCCGGAAGAGAAGCAACGTGATTGGGGCTCTTCTTACCGATGGGGGGTGGGTTGATAAACCAAGGGAGGTTAGGGGGGAAATTGTTGGATACTTTAAGAGCCATTTTGCCGAGGTTAGGTGGAGAAGGCCGAGACTAGATGGGGTGGAGTTTCCGATACTTACATCTTTACAAAGTGAAAACCTTATTCGTCCCTTCTCGGCGGACGAGGTTTGGAGTGTTGTTGCGGAGTCGGATGGTAATAAAAGCCCGGGACCGGATGGATTTAATTTTGCATTTCTTAAAGGTTCTTGGGAGGTAATTAGTAATGATGTCTTGGCTTTTATGCATGAATTTCATTCAAGTACATTACTTCCGAAGGCGTTCTCCTCGTATTTTGTAACCCTTAtccctaaaattttaaatcctcaatcTTTGGGGGATTTTCGCCCTATATCTCTTCTAGGGTGCTTCTATAAGTTGGTTGCAAAGGTGTTGACCAAGAGGCTATCAACGGTAATGGATTCACTCACTTCAAAGAATCAATCCGCATTCCTAAAAGGGCGTCTTCTAGTAGATGGGGTACTTGCAATTAATGAAGTGGTTGATTGGGtgaagaaaactaaaaaagaatgCTTAGTTTTCAAGGTGGATTTTGAGAAGGCATATGATTCCGTTAGTTGGAGCTTTTTGGAGTACATGCTCCGGAGGTTTGGCTTTGACGGTAAATGGAGGAGTTGGATTAAAGCATGTGTGTTTTCGGGAAGCCTCTCGGTTCTTGTTAATGGAAGCCCAACGGAACAAATTGACATTTGCAAGGGGCTTAAACAAGGTGACCCCCTTGCCCCGTTCTTGTTTATTCTAGTGGCAGAGGGGCTTGGAGCTTTGATGAAGAAAGCGGTGGGTCTTGGATTTTATAAAGGAGTTCAACTTAGTAACTCGGGAGCGATTATGTCCCACCTCCAATATGCCGATGATACTTTATTTATTGGGGAGACGTGTGTAGAGAATCTTTGGACTACTAAAGCGATCTTGCGGTGGTTTGAATTGATTTCGGGACTCAAAGTCAACTTTTTTAAGAGTAAGCTCTATGGGATTAATGAAGGAGGTGCTTTTGTTAATTCAGCGGCATCTTTTCTTAATTGTAAGGTTGGGAAGTTGCCATTTATTTACCTTGGGCTTCCGGTGGGGGCAAATCCTAGGCGTGTGGCTACTTGGAACCCGGTATTAGAGGTGCTCCAAAAAAGACTTGCATCGTGGAAGAACAAATATGTTAGTCTTGGTGGGAGGGTGGTGCTTTTGAACTCGGTGTTGTCGGCAATCCCAATCTTTTATCTATCTTTATTTAAAATGCCGGCGGGGTGTGGAAGAAGATTGTGTGCTTACAAAGGAGAACTTACTAATGTGGAGGATGAGTGGAAATGCCATTACTCAATTGGAGGTTTGTTTTCGGTTAGCTCCCTCTATAAATTTTTGTCCGGTATTATTATTCCCCCGATTTCTTTGGACCCGGAGTTGGTTCGGGACTTGGGCACTTTATGGGAAAGTTTAGCACCGTCAAAAGTTATTGTTTTCTCGTGGCAACTCTTGTTTGGTCGCATTCCAACAAGGGTTAATCTTGCCAAACGAGGAATAGTTGAGCATGGGTATAATTCATTTTGTGTGTTGTGTCCGTGGAGCTTGGAGTGCGAGGGGCACTTATTTGGTTGGTGTGCTTTCGCGTCAACAATATGGCGAAAAGTGTTTAATTGGTTTGGTTGGGATGAAGAGATGCCAAGAGACCCCTCGGAAATATTCCAAAGGTTTAGTAGAGGGGGGGCGAGTGGGAGAAGACATAAGGGACTCATTGCGGTATGGCATAGTGTGGTATGGACCATTTGGCGTGCTAGAAATGAACTAATCTTTAATGCAAAAGTGCCGGCTATAGAAGATGAGTTACAAGCCGATAACTTGCCTCGTgTTGATAGCTTCTTCATTTCTAGTTGGTGCAGCAGTAGCAGCAAAGTTATTGTAGAAGATTCAACTAAATTTAATCGTCTGAAATTTTATGGAACCGATGTTACACCTGGCTTGTCCTCCCATAATTTTGCTCCTGATAAGCACAGGAGCATGTACATGAACGATTCTTACTCGAGTGAGAGTTATGAAAAATACTTCCTTGATTCACCGACAGAAGAACTGATAGAACCATCTAGTTCTGGCATATCAGGAAATTCGGTTCACGCTGATAGTGATTCTTCTTACCAGCTCAGAGCTAATTCTGGAGGTTCCATGGTCACTGATAACCCATTTGATACTTATGTATCGTCTACAAGGAAAAGGGATGCTTATCAGTCAAACTTTGAATCAGATTTGTTTGAAAATGAGAGCCCAGATTGCTTTGAATTTGACGGTGAAATGCGATTGAAACTACAAGAATTGGAGAGGGCATTGCTTGGTGACAATAATGATGATTGTGATGATGATggggaaaacatatttagaACTGTACAGAGCATGGATATTGATCCTGACTTTGCTGAGTGTGCCAATCCTGCTCAGAACATGTCACTTCACGACTCACCAAAGGAATCTTTGTCATCGGATTCTAATCTTAGTTGCAGCAGCAGCTGCAAAGAAATATCGCAAAACTCTCCTCGGACCCCGAAGCAGTTACTCTATGAATGTGCTAGTGCACTTTCAGAAGGAAATGAAGTAAAAGCTTCAGCTATGATAGACGATCTCAGGCAGATGGTTTCGATTCAGGGAGATCCTTCCACAAGAATTGCAGCCTACATGGTGGAAGGACTTGCAGCTCGTTTGGCTTCGTCTGGAAAATCTATTTATAAAGCTTTGAGATGCAAGGAACCTCCTACTTCCGATCGTCTAGCAGCAATGCAGATACTATTTGAGGTGTGCCCGTGTTTTAAATTTGGATTCATTGCTGCAAATGGTGCGATTGCTGAGGCTATTAAAGATGATAAGAAGGTTCACATAATAGATTTTGATATCAACCAAGGAAGCCAATATATAACCCTAATACAAACACTTGCTTCTAGGCCAGGGAAACCGCCTTTTGTGAGATTGACCGGTGTTGATGATCCAGAATCAGTGCAGCGATCTGTTGGAGGCCTAAGTATTATAGGGCAGAGACTTGAAAAGCTAGCAGAAGTACTTGGATTGCCATTTGAATTCCGTGCCGTAGCGTCAAGTTCTTCAGTTGTTACTCCATCAATGCTTAACTGTCGTCCCGGGGAAGCAATTGTGGTGAACTTTGCATTCCAGCTTCATCACATGCGCGACGAAAGTGTATCAACGGTAAATGAGCGAGACCAGCTTCTTCGCATGGTTAAGAGCCTTAATCCAAAACTTGTGACAGTTGTGGAACAAGACGTAAACACTAACACTTCTCCGTTTCTCCCAAGATTTGTTGAAGCCTACAATTACTACTCTGCCGTATTTGAGTCGCTCGATGCCACTCTTCCGAGAGAGAGTCAGGATAGGGTGAATGTTGAAAGGCAATGCTTGGCAAGGGACATCGTAAATATCATTGCGTGTGAGGGCGAGGATAGAATCGAACGGTATGAAGTCGCCGGAAAATGGAGGGCAAGGATGAAAATGGCTGGATTTACTTCATCACCAATGAGTACAAATGTGGAAGAAGCAATTAAGGAACTCATTAGGCAGTATTGTGACAAGTACAAGATAAAACAAGAAATGGGGGCACTTCATTTTGGATGGGAAGACAAAAACCTGATTGTTGCTTCAGCATGGAAGTGA 3960 0.4255 MEDKIVMLKKEVERLDLKREEGSLVGNENEVQKDTLLELRHLLHSKDSLLFQQPRSRWLKEGDANTGYFHSCITSRKRSNVIGALLTDGGWVDKPREVRGEIVGYFKSHFAEVRWRRPRLDGVEFPILTSLQSENLIRPFSADEVWSVVAESDGNKSPGPDGFNFAFLKGSWEVISNDVLAFMHEFHSSTLLPKAFSSYFVTLIPKILNPQSLGDFRPISLLGCFYKLVAKVLTKRLSTVMDSLTSKNQSAFLKGRLLVDGVLAINEVVDWVKKTKKECLVFKVDFEKAYDSVSWSFLEYMLRRFGFDGKWRSWIKACVFSGSLSVLVNGSPTEQIDICKGLKQGDPLAPFLFILVAEGLGALMKKAVGLGFYKGVQLSNSGAIMSHLQYADDTLFIGETCVENLWTTKAILRWFELISGLKVNFFKSKLYGINEGGAFVNSAASFLNCKVGKLPFIYLGLPVGANPRRVATWNPVLEVLQKRLASWKNKYVSLGGRVVLLNSVLSAIPIFYLSLFKMPAGCGRRLCAYKGELTNVEDEWKCHYSIGGLFSVSSLYKFLSGIIIPPISLDPELVRDLGTLWESLAPSKVIVFSWQLLFGRIPTRVNLAKRGIVEHGYNSFCVLCPWSLECEGHLFGWCAFASTIWRKVFNWFGWDEEMPRDPSEIFQRFSRGGASGRRHKGLIAVWHSVVWTIWRARNELIFNAKVPAIEDELQADNLPRVDSFFISSWCSSSSKVIVEDSTKFNRLKFYGTDVTPGLSSHNFAPDKHRSMYMNDSYSSESYEKYFLDSPTEELIEPSSSGISGNSVHADSDSSYQLRANSGGSMVTDNPFDTYVSSTRKRDAYQSNFESDLFENESPDCFEFDGEMRLKLQELERALLGDNNDDCDDDGENIFRTVQSMDIDPDFAECANPAQNMSLHDSPKESLSSDSNLSCSSSCKEISQNSPRTPKQLLYECASALSEGNEVKASAMIDDLRQMVSIQGDPSTRIAAYMVEGLAARLASSGKSIYKALRCKEPPTSDRLAAMQILFEVCPCFKFGFIAANGAIAEAIKDDKKVHIIDFDINQGSQYITLIQTLASRPGKPPFVRLTGVDDPESVQRSVGGLSIIGQRLEKLAEVLGLPFEFRAVASSSSVVTPSMLNCRPGEAIVVNFAFQLHHMRDESVSTVNERDQLLRMVKSLNPKLVTVVEQDVNTNTSPFLPRFVEAYNYYSAVFESLDATLPRESQDRVNVERQCLARDIVNIIACEGEDRIERYEVAGKWRARMKMAGFTSSPMSTNVEEAIKELIRQYCDKYKIKQEMGALHFGWEDKNLIVASAWK 1319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01003 1319 CDD RT_nLTR_like 201 463 - -
Tsu01g01003 1319 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 748 1318 IPR030011 GO:0003700|GO:0005634
Tsu01g01003 1319 Pfam zinc-binding in reverse transcriptase 550 645 IPR026960 -
Tsu01g01003 1319 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 185 463 IPR000477 -
Tsu01g01003 1319 Pfam GRAS domain family 950 1319 IPR005202 -
Tsu01g01003 1319 ProSiteProfiles GRAS family profile. 940 1319 IPR005202 -
Tsu01g01003 1319 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 748 1318 IPR005202 -
Tsu01g01003 1319 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 211 462 IPR000477 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01003 Tsu-Chr1 9171297 9183738 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01003 759 1319 GRAS Transcription Factor Family AT1G21450 62.390 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu01g01003 GRAS 4.8e-135 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01003 - - gmx:100807048 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01003 01 9171297 9183738 Tsu01g01003 01 9171297 9183738 ECH