Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01002 ATGACATCCTCTCAGAATAAATTCGAAACCCTATCTAACGtcgaagaagaagatgattccAACAAATGCACCAACTTCTACGATATCTATGGTCCCCAAGCCAAAGCAGATGTTGTTTTCAAGGAAAATGATACTTCAAATCTGAATCTCGCTGACATTCAAGGACTTGTAACTTGGGTGCTTGGCGAAGGATTCATGCCATCATGGGTTTTTATCAAGAATAAACCTCTTATTCTCAAAGTGGTTATGCTCTATATGCCAGGCCTGGATGCAGCTTTGTACTTGTCACTGTCCAAAGCGCTtcccaatttaaaaaaatcatgtggCAAACCAAGACCAGTCCTTGCTCTCAGCTGTGTATCAGATAGTATGCAAACAATAGACGCACTCCTAACATgcaaacagaaaagaaaaagggatCAAGATGGTTCAATTACGACAAAATCTACTTTGACATCTCAACAAGAAGAAGTCTGTGGTGGCACTAACGGCCTATCATTTAAGGAGATTACGAAAGATATACCTTTCCCTGTTGCATACTATACACTAACAGAGAAAGATCTGGAAGAGAATGAATATCCTGTTAATAAGCCAGATTTTGTATCTACTCTTCCTGCTCCTCCGGGATCTCCTTTTTATGAGATGGTAGCACTTGACTGCGAGATGTGCATAACAGGCGAGGGGTTTGAGTTGACAAGAGTTACTCTAGTGGATGTCAAAGGACAGGTTTTGTTAGATGAATTGGTTAAACCATCAAATCATATCACTGATTACAATACAAGATTTAGTGGAATAACGGCCGAGATGTTAGATGGGGTGACGACAAGTCTGACAGACATTCAGGAAAAGTTCCGAAAACTGGTTTATAAAGAAACTATTCTTGTTGGGCATTCtttggaaaatgatttattaGCATTGAAGATATCACATGACCTAGTCATTGATACAGCAGTATTATATAAACACCCCCGAGGGTCTTCCCATAAATCCGCTCTACGGTTTCTTACTAAACGATTTCTTTCAAGGGAGATACAACAATCAGGGAATGGACATGACAGCATTGAAGATGCTAGAGCTACCATGGAATTAGCACTATTGAAGATCAGAAATGGGCCTGGCTTTGGTGCTCCTCCGTCCTTTATGCGGAAAAAGCTTCTTTCAATTTTGAGCGAGTCCGGCAAAACTTCTTCAATGATTGATGATATATCGATTGTAAAACGATTTGCCTCCGAGTCCTCTAATGCAATTCCAGTGACGTCTGATGAAGATGCACTTGCAAAAACCATCAAGGAGTTGAAGAATGAAAAGGTGCATTTTATCTGGACTCAATTTTCAGAGTTACACACACACTTGAAGAAACAAGCTGAGGATTCAGATAGCTTGAACAAAAAACTCGCGGAGATGATTGCATTGCATACATGTGAGAAGAGTTCTTCAAAAGGGAAAGGCCTCAAGTCGAATGTGTCTGCTGAACTGAAGGAAATTCTTACACGCATGGATAATAGAATTCATAAACTGTACAAGTCATTACCAACAAATGCTATGTTGATAGTTTGCACTGGTCATGGTGACACGGCAGTCGTCCGCAGGTTGAGGAAAATGCTTACGGAGGAGGGTGAAACTAATTTTGGTCGAGAGAAGATTGTGGAAAGCTTGGAAGAGTTTCAGGCCAGAGCTGAAGTAGCCTTGTGTTTTGTAGGTGTAAAACACTGA 1713 0.3894 MTSSQNKFETLSNVEEEDDSNKCTNFYDIYGPQAKADVVFKENDTSNLNLADIQGLVTWVLGEGFMPSWVFIKNKPLILKVVMLYMPGLDAALYLSLSKALPNLKKSCGKPRPVLALSCVSDSMQTIDALLTCKQKRKRDQDGSITTKSTLTSQQEEVCGGTNGLSFKEITKDIPFPVAYYTLTEKDLEENEYPVNKPDFVSTLPAPPGSPFYEMVALDCEMCITGEGFELTRVTLVDVKGQVLLDELVKPSNHITDYNTRFSGITAEMLDGVTTSLTDIQEKFRKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSHKSALRFLTKRFLSREIQQSGNGHDSIEDARATMELALLKIRNGPGFGAPPSFMRKKLLSILSESGKTSSMIDDISIVKRFASESSNAIPVTSDEDALAKTIKELKNEKVHFIWTQFSELHTHLKKQAEDSDSLNKKLAEMIALHTCEKSSSKGKGLKSNVSAELKEILTRMDNRIHKLYKSLPTNAMLIVCTGHGDTAVVRRLRKMLTEEGETNFGREKIVESLEEFQARAEVALCFVGVKH 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01002 570 SMART exoiiiendus 214 373 IPR013520 -
Tsu01g01002 570 Gene3D Alkaline Phosphatase, subunit A 371 562 IPR017850 -
Tsu01g01002 570 Gene3D - 213 370 IPR036397 GO:0003676
Tsu01g01002 570 SUPERFAMILY Alkaline phosphatase-like 380 525 IPR017850 -
Tsu01g01002 570 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 13 555 - -
Tsu01g01002 570 SUPERFAMILY Ribonuclease H-like 215 368 IPR012337 -
Tsu01g01002 570 Pfam Exonuclease 216 363 IPR013520 -
Tsu01g01002 570 PANTHER LD29573P 13 555 - -
Tsu01g01002 570 CDD REX1_like 216 365 IPR034922 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01002 Tsu-Chr1 9162629 9169436 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01002 214 363 C2H2 Transcription Factor Family AT3G27970 30.409 5.30e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01002 K14570 - gmx:100802793 898.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01002 01 9162629 9169436 Tsu01g01002 01 9162629 9169436 ECH