Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00999 ATGGGTTTTTATCAAGGCCTGGATGCAGCTTTGTACCTGTCACTGTCCAAAGCGATTcctgatttaaaaaaatcatgtggCAAACCAAGACCAGTTCTTGCTTTCAGcTGTGTGTCAGATAGTATGCAGACATTAGAAGCACTCCTAACATGCAAGCCGAAAAGAAAAACgaatcaaaatatttcaattacGACAAAATTGTCTCCGACATCTCAACAAGAAGAAGTCTGTGGTGATACTTCCGGTCTATCATTTGAGGAGATTCCGAAAGACATTCCTTTCCCTGTTGCATGCTATACACTAACAGGGAAAGATCTGGAAGAGAATGAATACCCTGTTAATGAGCCAGGCTTTCTTTCTACTCTTCCTGCTCCTCTGGGATCTCCTTTTTATGAGATGGTAGCACTTGACTGTGAGATGTGCATAACAGGTGAGGGGTATGAGCTAACAAGAGTTTCTCTAGTGGATGTCAAAGGACAGGTTTTGTTAGATGAATTGGTAAAACCTTCAAATCATATCATTGATTACAAAACAAGATTTAGTGGAATAACGGCCGAGATGTTAGATGGGGTGACGACAAGTTTGGCAGACGTTCAGGAAGAGTTCCGAAAACTGGTTTACAAAGAAACTATTCTTGTTGGCCATTCtttggaaaatgatttattaGCATTGAAGATATCACATGACTTGGTCATTGACACAGCAGTATTATACAAACACCCCCGAGGGTCTCCCTATAAATCTGCTCTACGGTTTcttgctaaaaattttcttTCAAGGGAGATACAGCAATCGTGGATTGGACACGATAGCATTGAAGATGCTAGAGCTACCATGGAATTAACACTATTGAAGATCAGAAATGGCAAGTAA 873 0.3792 MGFYQGLDAALYLSLSKAIPDLKKSCGKPRPVLAFSCVSDSMQTLEALLTCKPKRKTNQNISITTKLSPTSQQEEVCGDTSGLSFEEIPKDIPFPVACYTLTGKDLEENEYPVNEPGFLSTLPAPLGSPFYEMVALDCEMCITGEGYELTRVSLVDVKGQVLLDELVKPSNHIIDYKTRFSGITAEMLDGVTTSLADVQEEFRKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSPYKSALRFLAKNFLSREIQQSWIGHDSIEDARATMELTLLKIRNGK 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00999 290 Pfam Exonuclease 134 281 IPR013520 -
Tsu01g00999 290 PANTHER LD29573P 3 290 - -
Tsu01g00999 290 CDD REX1_like 134 283 IPR034922 -
Tsu01g00999 290 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 3 290 - -
Tsu01g00999 290 SMART exoiiiendus 132 290 IPR013520 -
Tsu01g00999 290 Gene3D - 131 290 IPR036397 GO:0003676
Tsu01g00999 290 SUPERFAMILY Ribonuclease H-like 133 284 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00999 Tsu-Chr1 9140329 9144448 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00999 124 281 C2H2 Transcription Factor Family AT2G48100 30.636 1.65e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00999 K14570 - gmx:100802793 440.269