Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00988 ATGGAATTCCCTCCTTTAACCACAACAGTTCGACACAATCAAATTCTGGTAGGAAATCTGTCTGAAAACCATACACTAGCAAGGAACATAGATAAAAACAACAATGACATTGGTTCTGGAATTGAGCAACCACATTTGCCTCCAACAAAGGACGAGGAACCACATCTTCCCATGAAAAATTTGATAAGAATCATGCGGCGTGCTCTTCCAGAGAACGCGAAAATAACTGATGATGCTAAGAAATCGATACAGTTATGTGTGACTGAATTTATAGCCATCATCACGATTGAGGCTAATGAGCGATGCAAGGCAGAGCATCGAAAGATCATTAACGGCGATGATTTAATATGGGCCATGAATATGTTGGGCTTTGAGGACTATGGTGGACTTTTAGCTATTTTTCTCGAAAACTATCGCCATCATGAGGCTCAGTTCAATTTCATGCCCATTGATTATGGGTTCAACAAGGACGAGTCAAGTGCTAGTGGTTCGGGTTGTGGCAGTAATAATGGTCAATGTTGA 522 0.41 MEFPPLTTTVRHNQILVGNLSENHTLARNIDKNNNDIGSGIEQPHLPPTKDEEPHLPMKNLIRIMRRALPENAKITDDAKKSIQLCVTEFIAIITIEANERCKAEHRKIINGDDLIWAMNMLGFEDYGGLLAIFLENYRHHEAQFNFMPIDYGFNKDESSASGSGCGSNNGQC 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00988 173 PRINTS CCAAT-binding transcription factor subunit A signature 102 120 - -
Tsu01g00988 173 PRINTS CCAAT-binding transcription factor subunit A signature 83 101 - -
Tsu01g00988 173 PRINTS CCAAT-binding transcription factor subunit A signature 121 139 - -
Tsu01g00988 173 MobiDBLite consensus disorder prediction 32 54 - -
Tsu01g00988 173 Gene3D Histone, subunit A 48 163 IPR009072 GO:0046982
Tsu01g00988 173 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 32 146 - -
Tsu01g00988 173 SUPERFAMILY Histone-fold 52 144 IPR009072 GO:0046982
Tsu01g00988 173 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 32 146 IPR027113 GO:0001228|GO:0006355|GO:0016602
Tsu01g00988 173 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 55 119 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00988 Tsu-Chr1 9038336 9040572 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00988 49 144 CCAAT-HAP3 Transcription Factor Family AT4G14540 53.125 4.87e-35 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tsu01g00988 CBFD_NFYB_HMF 2.4e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00988 K08065 - pvy:116138453 121.324