Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu01g00980 | ATGCAAGATAAGAAGCTTAGGATTCCAAAGAAGTATGTGGAGAAATATTGGAAAAATATGTCAAACCCAATTTTCCTTAGATTTCCAAATGGTGTTcagcaaaaaatattttgggttGAGAGAAATGGTGATATTTGGtttcaaaaaaattgggaaAATTTTGCAAAGCCTCTTAAATATGGAAATCTCTTAACTTTTAAATACATAGGTGGACCATATTTTAAGGTTAAGATATTTGGTGTTAATGCTTTAGAAATAAACTATTCCAATATCAAATCCATAgaagataaagaaaaatttgCTGAAGTGATTAAAGATGagagtgatgatgatgttgatgagaGTGAAGAAGATGACAGTGATGAAGATGACAGTGAAATAATCAAGCAATCTCAAAGGACAACAAAAAGCAAGAGAAAAATTCATTTGGATTCAAGGAGTAAATTCTTTGATGAAACTGATGTTGCTGGTACATCACAAAGAAGAAAAGGGGCTACTAAGAGAGGTGTCACTAATCCAAGTTTTGAGCTTACACTGACGGACACTTATGCATATGGCTATATATTTAGGATTCCAATTGAGTTTTCAAGAACATATATGGAAGATTTTGAAGGGAGTGCATCGATAAGAAGAGTCGGTGAAGATAGGACTTGGAAGATAGAGGTTAAATATGATCGGAAACGTGGTTATTCTTTTTTGTGGTTGGAAACCATTTTCTAA | 720 | 0.2972 | MQDKKLRIPKKYVEKYWKNMSNPIFLRFPNGVQQKIFWVERNGDIWFQKNWENFAKPLKYGNLLTFKYIGGPYFKVKIFGVNALEINYSNIKSIEDKEKFAEVIKDESDDDVDESEEDDSDEDDSEIIKQSQRTTKSKRKIHLDSRSKFFDETDVAGTSQRRKGATKRGVTNPSFELTLTDTYAYGYIFRIPIEFSRTYMEDFEGSASIRRVGEDRTWKIEVKYDRKRGYSFLWLETIF | 239 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu01g00980 | 239 | SUPERFAMILY | DNA-binding pseudobarrel domain | 5 | 82 | IPR015300 | - | |
| Tsu01g00980 | 239 | CDD | B3_DNA | 4 | 79 | IPR003340 | GO:0003677 | |
| Tsu01g00980 | 239 | MobiDBLite | consensus disorder prediction | 107 | 125 | - | - | |
| Tsu01g00980 | 239 | MobiDBLite | consensus disorder prediction | 105 | 139 | - | - | |
| Tsu01g00980 | 239 | PANTHER | TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED | 2 | 228 | - | - | |
| Tsu01g00980 | 239 | Gene3D | - | 157 | 236 | IPR015300 | - | |
| Tsu01g00980 | 239 | SUPERFAMILY | DNA-binding pseudobarrel domain | 171 | 230 | IPR015300 | - | |
| Tsu01g00980 | 239 | Gene3D | - | 1 | 83 | IPR015300 | - | |
| Tsu01g00980 | 239 | PANTHER | B3 DOMAIN-CONTAINING | 2 | 228 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu01g00980 | Tsu-Chr1 | 8985836 | 8987157 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu01g00980 | 1 | 236 | B3 DNA Binding Superfamily | AT3G18990 | 24.232 | 1.76e-14 | 70.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu01g00980 | - | - | mtr:MTR_1g035640 | 246.514 |