Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00976 atggaacaacaacaacaaagtatCCTATGTAAAACCACCGTCCACCACCAAACTGTTACTAAGAAatacacaaaaccaaacaagaGAAATGACACTAATAGTAACCAAATCAAATTACCACGAGTGATTCGATTAACGGTTACTGATGCAGATGCTACTGATTCATCGAGCGATGAAGCACCACAGTGTTTGATTCCCCGTAGGAGAATCAAACACTATGTTAATCAGATTGAAATCGAAACCGTTGTCTCAGCAACAGTTTCTGGTAGTAAGAAAAGGTCTTCTAGAGaaactaaattgaaaaattgtcGGAGACCGGAGAAGAaagttgctgctgctgctgttgctCGAGATGAAAGAAAGTTTCGCGGTGTTCGGATGAGACCGTGGGGAAAATGGGCGGCAGAGATTAGAGATCCGGGGACTCGAGTTCGGTTATGGTTGGGAACTTTCAATACTGCTGAAGAAGCTGCTATGGTTTATGATGCTGCCGCGATTAAGTTTCGCGGAAAAGATGCTGTTACAAACTTTGGTGTACCGGAGTTTGAGAATGCTGAAAAAATGGAAGTTGTTAAggagaaaacaaaaatcaatattaataatGTGAAGACGGAGATTTCTGTTTCCGGTGAAGATTCCGGCGATGAGTTTGTTAATCTATCTTCTCCGACGTCTGTTCTCCGTTTTAGACGGGAGGAATTGaatgaaaatgcaaaaaaacCGTTTAACGAAGATCACGAGTCTGTTGAACCGGTTAAACAGATTGAACCATTCAGTGAATGTGAAGGTGAGACGAGGTTTTTCGAAGAAACTAATGAGTTTCTTCGACAAGAAATGGATGATGTGTTTAATTTTCCAACAACTTCTGAATATTTTTCAAGTGTGTTTGATGAAACTCCTATTCAATTTTTTGATGAAACGACAGAGGTTTTGGTTAATGAGTGTCGTTTTGGTGATCATGTGGAATTTGATAAAAGGCACtcaccttcttcttcatcattatcatcatcagcTTTATGTGAAGGGGATGATATTCTTGATGATATTTTGTTAGGATTAGAACCTCTTGTTGTGCTTTGA 1080 0.3454 MEQQQQSILCKTTVHHQTVTKKYTKPNKRNDTNSNQIKLPRVIRLTVTDADATDSSSDEAPQCLIPRRRIKHYVNQIEIETVVSATVSGSKKRSSRETKLKNCRRPEKKVAAAAVARDERKFRGVRMRPWGKWAAEIRDPGTRVRLWLGTFNTAEEAAMVYDAAAIKFRGKDAVTNFGVPEFENAEKMEVVKEKTKININNVKTEISVSGEDSGDEFVNLSSPTSVLRFRREELNENAKKPFNEDHESVEPVKQIEPFSECEGETRFFEETNEFLRQEMDDVFNFPTTSEYFSSVFDETPIQFFDETTEVLVNECRFGDHVEFDKRHSPSSSSLSSSALCEGDDILDDILLGLEPLVVL 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00976 359 Pfam AP2 domain 121 170 IPR001471 GO:0003700|GO:0006355
Tsu01g00976 359 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Tsu01g00976 359 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Tsu01g00976 359 CDD AP2 121 177 IPR001471 GO:0003700|GO:0006355
Tsu01g00976 359 Gene3D AP2/ERF domain 120 179 IPR036955 GO:0003700|GO:0006355
Tsu01g00976 359 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF4-LIKE 15 268 - -
Tsu01g00976 359 SMART rav1_2 121 184 IPR001471 GO:0003700|GO:0006355
Tsu01g00976 359 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 15 268 - -
Tsu01g00976 359 SUPERFAMILY DNA-binding domain 121 178 IPR016177 GO:0003677
Tsu01g00976 359 ProSiteProfiles AP2/ERF domain profile. 121 178 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00976 Tsu-Chr1 8927784 8929050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00976 16 351 AP2-EREBP Transcription Factor Family AT4G27950 38.462 1.50e-50 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu01g00976 AP2 5.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00976 - - lang:109327510 244.588