Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00971 ATGGAAACTCAAAAAGTTCCAATAGATGATGACACCTTATTATTATCTGATATTTTCAATGAGACAGAGTTTGGATCAGAAGATCTTTTTTCCATTTTAGAAAATTTCAATAACTTTCCTCCCATTATAAATgaccaaaactcaaaaacaactTCTTCAACTGTTCCTCAAGATATTGAAACTGAGCTTGCTGAAACATCACAAAAATGCAAGAGACAGAAGATTGTTCCTAGTTCAATAGAGGAACCAAATAACAATGATGGACAACCTAGAATGTCGCATATCGCGGTGGAGCGTAATCGAAGGAAGCAAATGAATGAGCAATTATCTATCTTGAAATCACTTATGCCTTGCTTTTATGTCAAACGAGGAGACCAAGCATCAATAGTTGAAGGAGTAATTGATTACATAACTGAGTTACATCAACTAGTACAATGTCTAGAATccaagaaacaaagaaaagttTACAATGAAGTACTAAGTCCAAGACTATTAATTTCAAGTCCAAGACCTTCACCACTAATTAGTCCTAGAACAATATTACCAATTAGTCCAAGAACTCCACATTCACAACAATGGTTGCAACAATGTAATGGTTATCTTTCATCTGAGCCATCTCCTACTTCTTCGGCGTCTTCCATCAACGACAACATCAACGAGCTTGTTGCAAACTCAAAGTCTTCGGTTGCTGATGTTGAGGTTAAGTTTTGTGGTTCTCATTTGCTTTTGAAAACAGTTTCGTCGCGAATTCCCGGACAAGCTTTGAGAATAATGTCAGTTCTTGAAGATCTAGCTCTTGAAATTGTTCATGCCAGTGTTAATACTGCTGATGAAACCATGTTAAACTCTTTCACTATTAAGaTTGGAATTGAATGTCAACTCAGTGCTGAAGAACTTGCTCAACAAATCCAACAAACATTCTGTTAA 927 0.3441 METQKVPIDDDTLLLSDIFNETEFGSEDLFSILENFNNFPPIINDQNSKTTSSTVPQDIETELAETSQKCKRQKIVPSSIEEPNNNDGQPRMSHIAVERNRRKQMNEQLSILKSLMPCFYVKRGDQASIVEGVIDYITELHQLVQCLESKKQRKVYNEVLSPRLLISSPRPSPLISPRTILPISPRTPHSQQWLQQCNGYLSSEPSPTSSASSINDNINELVANSKSSVADVEVKFCGSHLLLKTVSSRIPGQALRIMSVLEDLALEIVHASVNTADETMLNSFTIKIGIECQLSAEELAQQIQQTFC 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00971 308 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 17 308 - -
Tsu01g00971 308 Gene3D - 81 155 IPR036638 GO:0046983
Tsu01g00971 308 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 89 140 IPR011598 GO:0046983
Tsu01g00971 308 PANTHER TRANSCRIPTION FACTOR FAMA 17 308 IPR044283 GO:0003700|GO:0010052
Tsu01g00971 308 MobiDBLite consensus disorder prediction 71 91 - -
Tsu01g00971 308 MobiDBLite consensus disorder prediction 64 91 - -
Tsu01g00971 308 Pfam Helix-loop-helix DNA-binding domain 91 140 IPR011598 GO:0046983
Tsu01g00971 308 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 88 157 IPR036638 GO:0046983
Tsu01g00971 308 SMART finulus 95 146 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00971 Tsu-Chr1 8861573 8864458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00971 19 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 43.027 4.00e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu01g00971 HLH 4.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00971 K20558 - gmx:100777437 341.658