Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00968 ATGGCATCAGTGTCCACTCAACCACAGTTTCGTTACACGCAGCCCCCATCAAAGGTGCTTCATTTGAGAAACTTGCCGTGGGAGTGTATAGAAGAGGAGCTAATTGAACTTGGAAAGCCATTTGGTAAAGTTGTGAACACAAAGTGCAATGTTGGAGCAAATCGTAATCAAGCTTTTATTGAATTCGCAGATATAAATCAAGCCATTGCGATGATATCATATTATGCTTCATCATCAGAGCCTGCTCAAGTACGGGGGAAAACTGTGTATCTGCAGTATTCCAATAGACAAGAAATAGTGAATAATAAAACTGCTGCGGATGTTGCTGGAAATGTACTGTTGGTAACAATTGAGGGTGCAGATGCACGCCTTGTGAGCATAGATGTTCTACACTTGGTTTTTTCAGCCTTCGGATTTGTGCATAAGATTACTACTTTTGAGAAGACAGCTGGATTCCAGGCACTGGTGCAGTTCTCAGATCAAGAAACTGCCACTTCTGCAAAGGATGCTTTGGATGGAAGAAGCATACCTAGCTACCTGCTCCCTGGGCATTTGGGACCATGTACCCTTAAAATCACATATTCTGGACATTCAGACTTAAGTGTCAAGTTTCAAAGTCACAGAAGCAGAGACTACACTAATCCTTACCTTCCCGTTGCTCAATCAGCTATGGAGGGAAACGGACAGTCCGTGATGGGTTTGGATGGGAAGAGACTGGAGGCCGAGAGTAATGTTCTTCTTGCATCAATTGAGAACATGCAGTATGCTGTAACCTTGGATGTCTTGCACATGGTTTTCTCTTCTTTTGGACCCATCCAAAAGATTGCAATGTTTGATAAGAATGGTGGTTTACAGGCTCTGGTTCAGTATCCAGATGTTCAAACAGCCATTGTGGCCAAGGAAGCCTTGGAAGGACACTGCATTTATGACGGCGGATTTTGCAAGCTTCACCTCTCCTATTCACGTCATACTGATCTGAGTATAAAGGTTAATAATGACAGAAGCAGAGACTATACCATGCCCACTGCACCGCCACCAGCTATGAGCGTTCAGCCCTCAGTTTCAGGGCAACAACAAGCTCCCATGACTGGTCCACCTTCTCAACAGTACAATACCGCTCAGTACGCTCCAAATAACAACCAGAATTTTATACCTCAATCTCAGGCTGGATGGGGACAAGCTCCACCAGCACCGCACTCTATGCAACAGCAACAGCAACGGATGCATCATAATCCTTACATGCCACCTGGTACAATGCCACCACAAGGTGGCCCTGGAATGATGCAGTATCCCGGTCACATTCAATAG 1308 0.4495 MASVSTQPQFRYTQPPSKVLHLRNLPWECIEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADINQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTAADVAGNVLLVTIEGADARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDQETATSAKDALDGRSIPSYLLPGHLGPCTLKITYSGHSDLSVKFQSHRSRDYTNPYLPVAQSAMEGNGQSVMGLDGKRLEAESNVLLASIENMQYAVTLDVLHMVFSSFGPIQKIAMFDKNGGLQALVQYPDVQTAIVAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTMPTAPPPAMSVQPSVSGQQQAPMTGPPSQQYNTAQYAPNNNQNFIPQSQAGWGQAPPAPHSMQQQQQRMHHNPYMPPGTMPPQGGPGMMQYPGHIQ 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00968 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 73 IPR000504 GO:0003723
Tsu01g00968 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 128 179 IPR000504 GO:0003723
Tsu01g00968 435 SMART rrm1_1 19 92 IPR000504 GO:0003723
Tsu01g00968 435 SMART rrm1_1 247 317 IPR000504 GO:0003723
Tsu01g00968 435 MobiDBLite consensus disorder prediction 349 389 - -
Tsu01g00968 435 CDD RRM3_PTBPH1_PTBPH2 243 339 IPR034794 -
Tsu01g00968 435 CDD RRM1_PTBPH1_PTBPH2 16 96 IPR034792 -
Tsu01g00968 435 CDD RRM2_PTBPH1_PTBPH2 110 204 IPR034793 -
Tsu01g00968 435 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 431 - -
Tsu01g00968 435 SUPERFAMILY RNA-binding domain, RBD 250 343 IPR035979 GO:0003676
Tsu01g00968 435 MobiDBLite consensus disorder prediction 397 411 - -
Tsu01g00968 435 SUPERFAMILY RNA-binding domain, RBD 7 101 IPR035979 GO:0003676
Tsu01g00968 435 MobiDBLite consensus disorder prediction 334 425 - -
Tsu01g00968 435 Gene3D - 112 222 IPR012677 -
Tsu01g00968 435 Gene3D - 242 345 IPR012677 -
Tsu01g00968 435 Gene3D - 5 111 IPR012677 -
Tsu01g00968 435 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 2 1 431 - -
Tsu01g00968 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Tsu01g00968 435 SUPERFAMILY RNA-binding domain, RBD 125 218 IPR035979 GO:0003676
Tsu01g00968 435 Pfam RRM-like domain 242 321 IPR021790 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00968 Tsu-Chr1 8812766 8817724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00968 16 431 Eukaryotic Initiation Factors Gene Family AT1G71770 23.896 3.37e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00968 K14948 - gmx:100810102 722.235