Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00957 ATGTGGGGTAAATATTACTCTACACTAGTTTTTCCattcttttgcttctttttGAGTGTAAATTACTACACTAACCTTGTTTCAGCTAATATTGAATGCATGAAAACAAGGTGTAATCACAAAGATGCTCCAATTATTCAATACCCTTTTAGACTTCCAAATATCCAATCACAAAATTGTGGAAAAATTGGGTTTGATATTTCATGCAATGAAAATCACCAAACCATACTAGAATTaccaaattcaatcaattttattatcaacaaaattgattataagTCACAAAAGATTCATGTGACCAACCCAAATGGATGTCTTCCAAAACTCATTTCAAATCTAAATATATCTTCTACTCCTTTTCATTTCCTTGATAATTCAAATTCCAATTATACCCTCTTCAATTGTTCATCCATGAACACTGCTTTACAATCTCATTATTCTTCCATTAAATGTCTTTCTTCTCATGGATACCAAGTTTATGCTTTGAATTCTACACTTAAAATTAAGGATGTTACTTTGACATATTGTACTAAGTTGTATGATATGTCTTTTGTTCCAAAAGATGTTGTATTTAGCAATGGACGTGATCTTGTTTTAGGATGGGATACAAGTTGTAGCAATGGAAGTAAAATAGAACATGATTGTTACAACATTGTCAAAGAATCTAAtgGTGGAAAGAAAAAAGAGCAGATTCTAGTACCAATACTATCATGTCTTGGAATTTTACTACTAGTCACTATATTATATCATGTTCGATATCGAactcaaaaagaagaaaacgaAGCAAGAATAGAGAAGTTCTTAGAAGATTATAGAGCATTAAAACCTACAAGGTATTGCTATTCAGACATAAAAAGGATCACAAACAATTTCAAGAATGAACTTGGACAAGGAGCATACGGAACGGTGTACAAAGGTAAACTATCTGGCGACATATATGTCGCGGTCAAGCTTCTCAAAACTTCCACAGGAAACGGGCCCGAGTTCATCAATGAAGTAGGAACAATGAGTCAAATTCATCACGTCAACGTTGTTCACTTAGTAGGCTTTTGCGCCGATGGACACACACGAGCTCTAGTTTATGAGTATTTACCAAATGGTTCGTTGCAGAAATTCATTTCCACAACGGATTTCAAAAACCATTTTTTGAGTTGGGAGAAGTTACAAGAAATTGCACTTGGGATAGCGAAAGGTATTGAGTATCTTCACCAAGGATGTGACCAAAGGATACTTCACTTCGATATAAAACCGCACAATATATTACTTGACAATAACTTCACTCCCAAGATATCTGATTTTGGTTTGGCTAAGCTTTGTTCTAAGGATCAAAGTGCGGTTTCCATGACTGCGGCTAGGGGGACTATTGGTTACATAGCACCAGAAGTTTTTTCTAGGAATTTTGGGAATGTGTCATATAAGTCTGATGTGTATAGTTTTGGAATGTTGTTGCTTGAGATGGTTGGAGGAAGGCAAAATGTCGATGTTGTAGAAAAGAGAAGTGGTTTAGGGTATTTTCCGGAATGGATTTATAATTTGATAGAAAAAGGGGATGATTTGAGCGAACATATTGAGGTGGAGAAATATGCAAAAATTGCGAAGAAACTCGCGATTGTGGGACTTTGGTGTATTCAATGGCACCCGGTCGATCGTCCTTCTATGCAAGTTGTTGTTCATATGTTGGAAGGAGATGGAGAGAAGTTAAGTATGCCACCAAATCCATTTGCTTCTGCTGATCCTGCTATAATGAATTCCGATCGTCTTCTTCGAGGTTGGATAATCGGAACCCTCTCGGAGGAAGCACTTGGACTGGTCGTCGGTATCGACACTGCCCACGCTGTTTGGGTCGCACTCAAAGATGCATATGCAGAAGATTCACAAGAACGTGAATTCACAATCCGTCAACAAATCACATATCTTCGCAAGGAAGATGACCAAACTATTGGTGAGCATATTCGCCCTTTCAAAGGTCTATGCGACAATCTTGCTGCAGTTGGGAAACCTATTCCAGACAAAGAAAAGGTATTCTACCTCCTCACAAGCCTTGGCCCTGATTATGAAACATTCACAACAACCATGCTAAAACCTCCAACGCCACCATACTCTGAGGTAATCTCACAACTCCAAAGTCTTGATCAACGGCGCAATTGGTTTTCCAACCGTGCTAAAATGCAAAACACTGATGCTCCTCAAATGGCCTTTTATGGCCAACAACAAAAACCTCATCAATCTTCCTCTCGAAATCGCGGGAACTCTCAAACCTTCACATCAACGGGGAGAGGGTTTCAGGCTCAACAACCTAATAGCCAAAGAAAAAATCAGCACATCTTGTCCACCCAGCAGAGACGCCCTCCACCAACGGGACAACATCGTATGACTCCTGCAGAACGGGATCTCTATCGAAATGAAAAATGTCAATATTGTGGCACAATAGGTCATATAGCAAAGATATGTTGGTGGGTGCCTAAGAAACCAACTCAATATGATGATATACCTCAAGCACTTGCAGCACTCACCTTGGACAATTCAATTGCTGAAACAGAATGGATCTCGGACACCGGAGTTTCAAATCACATGACAGGTAAAACTAGTATGTTGAGTAACATTCGTCAATGCTCAGGTACAGATTCTGTGCTCATTGGTGATGGTTCTCCTCTACCAATCCATGCTATTGGTGATTCCTTCATTGAGCAAAAAAATACCACGCTGCCGCTTCATGATGTCTTACTTGTTCCcgatttaacaaaaaatttgcTCTCTGTAAGTCAACTAACCAAACATTTTCCTGTTAATTGTGAATTTTCTAATGTTGATTTTTGTGTAAAGGAACGAGAAACTGGGGAATCAATAATCATCGGGAGACGCAAGGGTGATCTATatgttctttcttcttttcctGAATTGTATTTCTCACATCGCTTCAAATCTGGCTCAACATACATTTGGCATCAGCGACTAGGACATCCTCAAACTTCGGCTTTAAAATTACTAAAGAATAAAGGGTTAATTGATGTAGTTGGAACTGTTAAACCTGAACATCTTTGTGATAGTTGTCAATTGGGAAAGCTTAATAaattatctttttcttcttctgagcATTCTAGTTCtgttatatttgaaaaaatacattGTGATTTATGGGAACTTGCTCCTGTTTTATCtatttctaaattcaaatattatgcATGTTTGGTTGATGACTTCTCTAAGTATACATGGATTATTCCTTTACAACACAAATCTGATTTTGTTAATGCATACTTATCCTTTGAGCAGTatgttaaaaaacaatttaacaaagaaattaaaaaatttcactcTGATGGAGGAGGTGAGTTCATCAACTCCAAACTTTCAACTCATTTTCGTTTAACAGGTACAATTCATCAAGTATCATGCCCATATACACCAGAACAAACAGGTATGGTTGAAAGACGACATCGAATAATACGGGAACTAGGTATGACTATGTTGTTCCATAGTGGTGCTCCTTTATTTCTATGGTTAGAAGCTTTTAATACGGCTGTTTATCTTATTAATAGACTCTCATCCTCTTCTCTTAATTTTGAAACTCCTTATTTTTTTGTGCATGGGACACATCCTAACTATTCTTCTCTACGAGTATTTGGCACTAAATGCTTCCCTTACACATGGGATACACGACGCAACAAATTTGATCCAAAAACTATTCCTTGTGTCTTTGTGGGGTATAGTGATACACATAAAGGATATAAATGCTTTCATCCTTCTACTAAGAAATTTTTTATCTCATGGCACATTGTTTTCgatgaattattttttccatataAAGCTAATCATCATAATATAATTCCCCCTCCTACACAACATGTAGTTAGCATATTTGATTCTTGGCTACCCCATACTAATTTCAAATCTTGTGCAGATTTGACACCAACAACCTCCACTTCACCACCATGCTCCAGTCCGCTACCAACAAATTTAGTAAACTCTTTTGCCCTGCAACTCCCTACTCCACCTAATGATCAACCAGAACAATCCTCACATATTGAACCTGAGCAGCCTGAAGACTCCACACACCATTCACACACTGAAAATGAGGTTGAGCTTGTGACTCCTTCTCCGCTTATTGATGAACCAGAACAATTCTCACAAATTGAACCTGAACAATCTGACCACTCATCACACCCTTTACATACTGAAAATGAGCTTGTGAGTGTGACGCCTACTTCAAATCAACAACCTGAGCCTATTATTACTGTCCCGGTTCAACTACCACATGATGTACCTGTACGTTCAATTGTTACTCGCTCACAACACGGGATTATAAAGTCTAATCCTAAGTACGCCCTAATTACCATGCCTTGTGTCGACATTCCACGTAACCCGCATAACATTCGCTCGGCATTAGCTCACCCTGGATGGAAAGCCGCAATGGACGAAGAAATTGAAGCCTTGCATAAGAATCAAACTTGGGAGCTTGTTCCTCGCACCCCTAACTTGCATGTTATTAGCTCTAAATGGGTcttcaaatcaaaactcaaaccTGATGGAACTCTAGATCGCCTCAAAGCTCGCCTCGTTGCAAAGGGATATCACCAAGTTGATGGAGTTGATTATACTGAAACATTTTCTCCTGTAATCAAGCCGGGAACAATACGGGTAATTATCACTATAGCTCTTGTTAAAAAATGGTCCATTCGACAACTTGATGTAAAAAATGCCTTCTTGCATGGCATGCTTGCTGAAAACATATACATGGAGCAACCTCCTGGCATGGCTGATCCTCAATACCCAAACCATGTCTGCAAACTTCAAAAGGCTCtttatggtcttaaacaagcgCCTCGAGCATGGTTTGACCGCTTTAGTTCTTATCTCATTAactatg 4867 0.368 MWGKYYSTLVFPFFCFFLSVNYYTNLVSANIECMKTRCNHKDAPIIQYPFRLPNIQSQNCGKIGFDISCNENHQTILELPNSINFIINKIDYKSQKIHVTNPNGCLPKLISNLNISSTPFHFLDNSNSNYTLFNCSSMNTALQSHYSSIKCLSSHGYQVYALNSTLKIKDVTLTYCTKLYDMSFVPKDVVFSNGRDLVLGWDTSCSNGSKIEHDCYNIVKESNGGKKKEQILVPILSCLGILLLVTILYHVRYRTQKEENEARIEKFLEDYRALKPTRYCYSDIKRITNNFKNELGQGAYGTVYKGKLSGDIYVAVKLLKTSTGNGPEFINEVGTMSQIHHVNVVHLVGFCADGHTRALVYEYLPNGSLQKFISTTDFKNHFLSWEKLQEIALGIAKGIEYLHQGCDQRILHFDIKPHNILLDNNFTPKISDFGLAKLCSKDQSAVSMTAARGTIGYIAPEVFSRNFGNVSYKSDVYSFGMLLLEMVGGRQNVDVVEKRSGLGYFPEWIYNLIEKGDDLSEHIEVEKYAKIAKKLAIVGLWCIQWHPVDRPSMQVVVHMLEGDGEKLSMPPNPFASADPAIMNSDRLLRGWIIGTLSEEALGLVVGIDTAHAVWVALKDAYAEDSQEREFTIRQQITYLRKEDDQTIGEHIRPFKGLCDNLAAVGKPIPDKEKVFYLLTSLGPDYETFTTTMLKPPTPPYSEVISQLQSLDQRRNWFSNRAKMQNTDAPQMAFYGQQQKPHQSSSRNRGNSQTFTSTGRGFQAQQPNSQRKNQHILSTQQRRPPPTGQHRMTPAERDLYRNEKCQYCGTIGHIAKICWWVPKKPTQYDDIPQALAALTLDNSIAETEWISDTGVSNHMTGKTSMLSNIRQCSGTDSVLIGDGSPLPIHAIGDSFIEQKNTTLPLHDVLLVPDLTKNLLSVSQLTKHFPVNCEFSNVDFCVKERETGESIIIGRRKGDLYVLSSFPELYFSHRFKSGSTYIWHQRLGHPQTSALKLLKNKGLIDVVGTVKPEHLCDSCQLGKLNKLSFSSSEHSSSVIFEKIHCDLWELAPVLSISKFKYYACLVDDFSKYTWIIPLQHKSDFVNAYLSFEQYVKKQFNKEIKKFHSDGGGEFINSKLSTHFRLTGTIHQVSCPYTPEQTGMVERRHRIIRELGMTMLFHSGAPLFLWLEAFNTAVYLINRLSSSSLNFETPYFFVHGTHPNYSSLRVFGTKCFPYTWDTRRNKFDPKTIPCVFVGYSDTHKGYKCFHPSTKKFFISWHIVFDELFFPYKANHHNIIPPPTQHVVSIFDSWLPHTNFKSCADLTPTTSTSPPCSSPLPTNLVNSFALQLPTPPNDQPEQSSHIEPEQPEDSTHHSHTENEVELVTPSPLIDEPEQFSQIEPEQSDHSSHPLHTENELVSVTPTSNQQPEPIITVPVQLPHDVPVRSIVTRSQHGIIKSNPKYALITMPCVDIPRNPHNIRSALAHPGWKAAMDEEIEALHKNQTWELVPRTPNLHVISSKWVFKSKLKPDGTLDRLKARLVAKGYHQVDGVDYTETFSPVIKPGTIRVIITIALVKKWSIRQLDVKNAFLHGMLAENIYMEQPPGMADPQYPNHVCKLQKALYGLKQAPRAWFDRFSSYLINY 1622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00957 1622 ProSiteProfiles Protein kinase domain profile. 289 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00957 1622 MobiDBLite consensus disorder prediction 1324 1340 - -
Tsu01g00957 1622 Pfam Wall-associated receptor kinase galacturonan-binding 33 100 IPR025287 GO:0030247
Tsu01g00957 1622 ProSiteProfiles Integrase catalytic domain profile. 1030 1199 IPR001584 GO:0015074
Tsu01g00957 1622 ProSitePatterns Protein kinases ATP-binding region signature. 295 317 IPR017441 GO:0005524
Tsu01g00957 1622 MobiDBLite consensus disorder prediction 735 786 - -
Tsu01g00957 1622 MobiDBLite consensus disorder prediction 1341 1359 - -
Tsu01g00957 1622 Gene3D Phosphorylase Kinase; domain 1 263 363 - -
Tsu01g00957 1622 Gene3D Transferase(Phosphotransferase) domain 1 364 569 - -
Tsu01g00957 1622 Gene3D - 1030 1208 IPR036397 GO:0003676
Tsu01g00957 1622 MobiDBLite consensus disorder prediction 735 795 - -
Tsu01g00957 1622 SUPERFAMILY Ribonuclease H-like 1038 1208 IPR012337 -
Tsu01g00957 1622 PANTHER RECEPTOR-LIKE KINASE 26 582 - -
Tsu01g00957 1622 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 1481 1620 IPR013103 -
Tsu01g00957 1622 MobiDBLite consensus disorder prediction 1324 1361 - -
Tsu01g00957 1622 Pfam Protein tyrosine and serine/threonine kinase 291 560 IPR001245 GO:0004672|GO:0006468
Tsu01g00957 1622 SUPERFAMILY Protein kinase-like (PK-like) 273 561 IPR011009 -
Tsu01g00957 1622 Pfam Integrase core domain 1039 1136 IPR001584 GO:0015074
Tsu01g00957 1622 Pfam GAG-pre-integrase domain 974 1021 IPR025724 -
Tsu01g00957 1622 PANTHER RUST RESISTANCE KINASE LR10-RELATED 26 582 IPR045874 GO:0004672
Tsu01g00957 1622 Pfam gag-polypeptide of LTR copia-type 584 716 - -
Tsu01g00957 1622 SMART serkin_6 289 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00957 1622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672|GO:0006468
Tsu01g00957 1622 SUPERFAMILY DNA/RNA polymerases 1480 1613 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00957 Tsu-Chr1 8723810 8737275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00957 220 574 Receptor kinase-like Gene Family AT5G38280 50.136 2.46e-104 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g00957 PK_Tyr_Ser-Thr 5.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00957 - - zju:107414589 662.144