Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00956 ATGTCTTGGAAAATGCTTGTTAATCTAATTCTAATTGCAATTATGATCCTCCTAAACCCTCTTCTTTGCCTAACAGAATCAAATCACCAATGTCACCTTTCATCTTGTGGCAACATACAAAACATCACCTACCCTTTTCGTCTAAAAGGCGATCCTGAAAACTGTGGAGATCAAAATTACGAACTTTCATGTGAGAACAATCAAACAATACTAAATCTATACAATGGAAAATACATTGTAGAATCCATCAACTACAATAATTCCACAATAAGAGTAACAGATTCAGGTCTCAACAAAGAAAATTGCTCTTCAATTCCTCTCTACACTTTAACAAATGAAAATTTCACAACTGAAAAACTATATAGCTTGTTAAATGATAATAACTTAGAAACCATAGCATTTATAAATTGTGCAGCTTCAATTAATTCTCCTCTTTACATTGATACTTCATCTTGTATCAAAGGATTAATCAACTCTTCCAATTATGCTGTGCTTGGTGAGCTGAAGTTAACTGAGTTGGAAGATTCATGCAGCATACTTGTGATGGTTATGATGATGACTTCAAATTTGAACAAAGGTGACAATAAATTTTCATATGTGAATATTCATAAGCAACTTGTTTATGGATTAGAGCTTTCTTGGCATGAGATATTCTGCAAAGAGTGTCAAGGTAGAGGGTACTGTAAGTTGAACAATAACAATGAAGTCATTGGTTGTTCAAGAACTAAACCTTGTAGTGATGACTATACATCCTCTTTTAAATGTCCTAACAAACTTGGAGCTATCATTGGACTAATTCTTCTAATAAGAATCATAGGAGGTGTAGTATTTATTCCCATGTATATGATATATAAATGGAGAAGGAGACATTTATCTGCATATGATTCAGTTGAAGAGTTTCTTAAAACTCATAACAATCTTATGCCAATAAGATACTCTTACTCAgacattaaaaaaatgacaaaaggATTCCAGGATAAACTTGGTGAAGGTGGCTATGGTTCTGTTTACAAAGGAGAACTTCGCAACGGTCACTTCGTAGCAATCAAGATGTTAGGTGGAAAATcaagagcaaatggacaagaatTCATCAATGAAGTTGCTACCATCGGAACAATCCATCATGTTAATGTTGTTCGCCTTATTGGATTTTGTGTTGAGAAAACAAAAAGAGCGCTTGTTTATGAGTTCATGCCTAATGGTTCATTAGACAAACATATTTTCTCTAGAGAAAGAATGAATATTCCTTTGAGTTGTGAAAAAATGTTTGATATAGCTCTTGGTGTAGCGCGCGGTATTGAATATCTACATAGAGGATGTGACATGAGGATTTTGCATTTTGACATTAAGCCTCATAATATTCTTCTTGATCTGAATTTCAGTCCCAAGGTTTCGGATTTTGGACTAGCAAAGTTATATCCAATTGATAATAGCATTGTGTCGCTTACCGCTGCAAGAGGAACTATGGGATACATGGCTCCGGAATTGTTCTATAAGAACATTGGAGGAGTATCGTACAAAGCTGATGTTTACAGTTTTGGAATGTTGTTAATGGAAATGGCAAGTAGGAGAAGGAACATGAATGAGGGTGAAGATCGTAAGAGTCAAGTTTATTTCCCTTCTTGGGTTTATGACCAATTTAGCGAAGGGAAGGAAATAGAAATAGGGAATGGTACCGAAGAGGAGGAGAAGATATTGAAGAAAATGATAATAATTGCGTTGTGGTGTATACAGATGAAACCAAGTGATCGTCCTTCGATGAACAAAGTGGTTGAGTTGCTTGAAGGAGATGTTGAGTCCTTGGAAATGCCTCCTAAGCCATTTCAAGCTCCAAAAGGAATGCCTGTACAAGGCATTGGACAATTCAGAAATCTACCTTGGTTGCTACCTGGAGATTCTACAAACTCACTTACCATTGTTATAAATCGACGTTAA 1935 0.3468 MSWKMLVNLILIAIMILLNPLLCLTESNHQCHLSSCGNIQNITYPFRLKGDPENCGDQNYELSCENNQTILNLYNGKYIVESINYNNSTIRVTDSGLNKENCSSIPLYTLTNENFTTEKLYSLLNDNNLETIAFINCAASINSPLYIDTSSCIKGLINSSNYAVLGELKLTELEDSCSILVMVMMMTSNLNKGDNKFSYVNIHKQLVYGLELSWHEIFCKECQGRGYCKLNNNNEVIGCSRTKPCSDDYTSSFKCPNKLGAIIGLILLIRIIGGVVFIPMYMIYKWRRRHLSAYDSVEEFLKTHNNLMPIRYSYSDIKKMTKGFQDKLGEGGYGSVYKGELRNGHFVAIKMLGGKSRANGQEFINEVATIGTIHHVNVVRLIGFCVEKTKRALVYEFMPNGSLDKHIFSRERMNIPLSCEKMFDIALGVARGIEYLHRGCDMRILHFDIKPHNILLDLNFSPKVSDFGLAKLYPIDNSIVSLTAARGTMGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASRRRNMNEGEDRKSQVYFPSWVYDQFSEGKEIEIGNGTEEEEKILKKMIIIALWCIQMKPSDRPSMNKVVELLEGDVESLEMPPKPFQAPKGMPVQGIGQFRNLPWLLPGDSTNSLTIVINRR 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00956 644 PANTHER RUST RESISTANCE KINASE LR10-RELATED 262 615 IPR045874 GO:0004672
Tsu01g00956 644 Gene3D Phosphorylase Kinase; domain 1 296 397 - -
Tsu01g00956 644 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Tsu01g00956 644 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524
Tsu01g00956 644 CDD STKc_IRAK 328 596 - -
Tsu01g00956 644 SUPERFAMILY Protein kinase-like (PK-like) 303 594 IPR011009 -
Tsu01g00956 644 SMART serkin_6 322 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00956 644 Gene3D Transferase(Phosphotransferase) domain 1 398 603 - -
Tsu01g00956 644 Pfam Wall-associated receptor kinase galacturonan-binding 31 94 IPR025287 GO:0030247
Tsu01g00956 644 PANTHER RUST RESISTANCE KINASE LR10-RELATED 11 257 IPR045874 GO:0004672
Tsu01g00956 644 Pfam Protein kinase domain 326 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00956 644 ProSiteProfiles Protein kinase domain profile. 322 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00956 644 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 11 257 - -
Tsu01g00956 644 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 262 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00956 Tsu-Chr1 8719539 8721868 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00956 1 607 Receptor kinase-like Gene Family AT1G66910 36.124 9.03e-110 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g00956 Pkinase 3.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00956 - - hbr:110665770 687.952