Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00955 ATGGTTTCTGCCTCTATTTTTGGAGGAAAAGTCAGGTATGGAATAATGTTTCTATACTTATTTCTACTTCCACACAAAACTTACCCCAAACCCCAGccttgtttttcttcttcctgCGGGAAAATTTCCAACATAACCTATCCATTCCGACTAAAAAACGATCCAGATCACTGCGGCAACAATAAGTACGAGTTGGATTGTGTGAACAACGTTACAGTATTGAAGTTGTTTGATGGTGAATATTTAGTAGAATCAATCAATTACAACAATTATACAATCCGACTTGTTGACCCAAACATTCAACCCAACAATTGCTCCTCTCTCCCTAGCTTTTTTTTATCCCGCCACAATTTCACTGATTCATACTACCGGGACTACGAGTTCTTTTACAATCAAAGTAAGGTTGATTTATCTAAGCCAGTAATATACATGAAGTGTACAAGTCCACCTAGTAAGGTTGTGGATAGGTATTATGCGGATGCTGCTTCATGCTTGGATCAACACACTTACGCTATTGTTGGGGACCCACAATTTGGAATTTTGGAGCCTCAATGCCGTGTTAAGCTTATTACACTCACATCCTTCTGGGGTCCGACACTTGTATTTCCATCTACCTCCAACAATCCTATAGGTAGTGTTTCGTATATGGATATTCACAAGGCACTAGACTATGGATTTGAAATTTCGTGGATGCAAGCTTACTGTCCTTGTTATCAATGCCATCTCAAGGTGCCTGCCGGCGAGATTCAGTGTTCCTACTCCTTCGGCAAGACCGgATCCAACATATTTTCCATCATGTTAGAACCTCTGTTTGCGTATTTCAGTGGCATTTATCAAGGACTTTGTCAGCTGGCGGACGTGAATGAGTCtgatgattatttttatgaagCTGGAATATTTACAGGAAAGTATGTTCTGCCAATTAGAGTTATGTTGGGCATCATATTTTTTACTATGCTGTTGATTAGGACGTATCGAAGAAGACATGCATCAATATATGAAAACATCGAAGATTTTCTGCAAGGTAATACTCTTATGCCAATAAGGTATTCATACAAAGAGATAAAACAGATGACAAAAGGTTTCAAGGTAAAATTGGGTGAAGGAGGTTATGGAGATGTGTATAGAGGAAATCTAATAAGTGGACCATTTGTAGCCATAAAGATGTTGAAGATAAAATCAAATGCTACTGGGCAAGATTTCATAAGTGAAGTTGCAACCATAGGAAGAATATACCATTCAAATGTGGTAAGACTAATTGGGTTTTGTGTCGAAGGATCAAAACGCGCTCTTGTCTATGAATATATGCCTAATGGATCTcttgataaatatattttcaacaaagaGGGAGTTATATCTTTAACTTGCAATCAAATATATGAGATATCTCTTGGAGTGGCTCGTGGAATTTCTTATCTTCATGAGGGTTGTGATAtgcaaattttacattttgataTTAAGCCTCATAATATCCTTCTTGACGAAACTTTCATCCCTAAAGTTTCGGACTTTGGTCTTGCAAAGCTTTATCCTATTGACAATAGCATTGTCACTTTGACAGCAGCCAGAGGAACAATTGGATACATGGCTCCTGAATTGTTCTACTATAATATCGGAGGAATATCATATAAGGCTGATGTGTATAGCTTTGGAATGCTTTTGATTGAAATGGCAAGTAGGAGAAGAAATTTAAATCCACATGCTGAGAATTCAAGTGAACTTTACTTTCCCTTTTGGATTTATGATCAATTGTATAAAAATAGAGAGAGGGAAATGGAAGATGTTATCATGGAAGAaattaatgatgttttgaaGAAAATGTTCCTAGTTGCACTCTGGTGTATACAGTTGAAACCCGTTGATCGTCCTTCGATGAACAAAGTAGTGGAGATGCTTGAAGGAGatattgaaaatattgaaatgCCTCCAAAGCCTTTACTATATCCAGATGAAACAATTCAAGAGAATCTTGATATCAACTCAAATGAAACTGTATCAGATGTTGGCTCTACCAGTTATGTGGAGGAAATTGCAACTAATCCTTTATTGAAGTATTCAGATTGA 2064 0.3571 MVSASIFGGKVRYGIMFLYLFLLPHKTYPKPQPCFSSSCGKISNITYPFRLKNDPDHCGNNKYELDCVNNVTVLKLFDGEYLVESINYNNYTIRLVDPNIQPNNCSSLPSFFLSRHNFTDSYYRDYEFFYNQSKVDLSKPVIYMKCTSPPSKVVDRYYADAASCLDQHTYAIVGDPQFGILEPQCRVKLITLTSFWGPTLVFPSTSNNPIGSVSYMDIHKALDYGFEISWMQAYCPCYQCHLKVPAGEIQCSYSFGKTGSNIFSIMLEPLFAYFSGIYQGLCQLADVNESDDYFYEAGIFTGKYVLPIRVMLGIIFFTMLLIRTYRRRHASIYENIEDFLQGNTLMPIRYSYKEIKQMTKGFKVKLGEGGYGDVYRGNLISGPFVAIKMLKIKSNATGQDFISEVATIGRIYHSNVVRLIGFCVEGSKRALVYEYMPNGSLDKYIFNKEGVISLTCNQIYEISLGVARGISYLHEGCDMQILHFDIKPHNILLDETFIPKVSDFGLAKLYPIDNSIVTLTAARGTIGYMAPELFYYNIGGISYKADVYSFGMLLIEMASRRRNLNPHAENSSELYFPFWIYDQLYKNREREMEDVIMEEINDVLKKMFLVALWCIQLKPVDRPSMNKVVEMLEGDIENIEMPPKPLLYPDETIQENLDINSNETVSDVGSTSYVEEIATNPLLKYSD 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00955 687 ProSiteProfiles Protein kinase domain profile. 360 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00955 687 Gene3D Transferase(Phosphotransferase) domain 1 436 641 - -
Tsu01g00955 687 ProSitePatterns Serine/Threonine protein kinases active-site signature. 481 493 IPR008271 GO:0004672|GO:0006468
Tsu01g00955 687 PANTHER RUST RESISTANCE KINASE LR10-RELATED 16 663 IPR045874 GO:0004672
Tsu01g00955 687 Gene3D Phosphorylase Kinase; domain 1 337 435 - -
Tsu01g00955 687 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 16 663 - -
Tsu01g00955 687 SUPERFAMILY Protein kinase-like (PK-like) 345 633 IPR011009 -
Tsu01g00955 687 SMART serkin_6 360 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00955 687 Pfam Wall-associated receptor kinase galacturonan-binding 34 97 IPR025287 GO:0030247
Tsu01g00955 687 ProSitePatterns Protein kinases ATP-binding region signature. 366 388 IPR017441 GO:0005524
Tsu01g00955 687 Pfam Protein kinase domain 364 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00955 Tsu-Chr1 8698647 8718889 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00955 39 672 Receptor kinase-like Gene Family AT5G38260 35.736 1.24e-104 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g00955 Pkinase 5.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00955 - - cam:101508554 1008.82