Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00954 ATGGTAATTACCTTGTTGGTCATGATTCTCATCTTGGTTTGCAATTTCAACACAGAGATATATGGCTGTAGCGGAAGGGATTTCAGGTGTGGACATAACGGTCCACCAATCCGATTTCCCTTCCGACTTAAAGACAAAGAAACTGAACAAAGTTGCGGTTATACCGGCTTTGATCTTACTTGTTCAGACACAAACAAAACTCAAATTGAACTCCCTTCGCATTCTGGTCCAATTATACTCGAAGTCATGAGCATATTTTATCAAGACAACCTTCTATACTTAACTGACCCGGAAAATTGTCTTCCTAGACAGTTTGTAAAGCTCCTTCAATCACCAATTTCTCCTTTTCAATTATTTGAGAGTCCTGAATTCAGGTATAACTACACCATCCTCCATTGTAGTTCATTTTTCTGCCCggtggttgttgttgattctAGTGATACACTCCTTGAGTCTCGTTTGGACCCAATTCTCTGTACCAAAACTTCAGATTTTACTTTTTCATCATCGTTGTTCTCGGTGGTATATGAAAATCAAATGATTTTGACATGGTCGAAACCCAATTGTAGCAAGTGTGAAAAAGAAGGCAAGATGTGTAAACTTAAAAACAACGGAACTGAAGACGACGAGATAGAATGTTTTGACCGTTATCACAAACCAACTAAGAAGATACTTCTATATGTCACAGTTGGATTCGTTGGTTTGGTTCTGGTGGCGCTGATTCTTGCAGCATGTTTACAtctttatttctattttaaacTAAAAGGTGAAGATGAGGTTAGAATCGAAAAGTTCTTAGAGGATTATAGGACATTTAATCCTGCGAGATTCTCTTATGCTGATATAAAGAGGATTACAAATGATTTTAGGGAAAAGTTAGGTGAAGGAGCTCATGGAGCAGTTTTCAAAGGTAAACTATCTAATGAAATTTTTGTGGCTGTGAAGATGCTAAACAACGCAGAGGGCGATGGAAAAGAGTTCATTAACGAAGTTAAAGCTATGGGAAAAGTTCATCACATCAATGTGGTTCGCTTGGTTGGATTTTGTGCTGATGGATGCTATCGTGCTCTTGTTTATAATTTCTTTCATAACGGTTCATTACAAAACTTCATAACCCGACCTGATGACATGAACCGTTTTCTTGGTTGGGAGATGCTACACCAAATTGCTATCGGCATAGCCAAAGGTATTGAGTATCTTCACATGAGTTGTGATCAAAGAATTCTTCACTTCGATATTAATCCCCACAATGTATTATTAGACGAcaaatttattccaaaaatTACAGATTTTGGTTTGGCTAAATTGTGCTCTAAAAATGAAAGCATAGTGTCAGTAACTGCCGCAAGAGGGACTTTGGGTTACATTGCACCAGAAGTATTTTCAAGAAACTTTGGAAATGTATCGTATAAAGTTGACATATATAGTTATGGGATGTTACTACTCGAAATGGTTGGAGGAAGAAAGAATATAAGTCAATTGTCTGAGGAAAATTTTCAAGTTCTATATCCAGAATGGATTCACAATCTGCTCGAAGGGCGAGATATGCAAGTGAAAATTGAGGGAGCTGGAGATgatagaattttaaaaaaacttgcAATTGTAGGACTATGGTGCATTCAATGGCACCCAATAAATCGACCATCTATAAAAGTTGTGCTCCAAATGTTAGAATCTCtagaagaagaaaacttgatTGTGCCCCCAAACCCTTTTAACTCGACAACTTTAGGAATTGGTGAAATCCCAATAAAATATTCAACCTTAGAGTTAGAATCTATACATGAATGA 1791 0.3568 MVITLLVMILILVCNFNTEIYGCSGRDFRCGHNGPPIRFPFRLKDKETEQSCGYTGFDLTCSDTNKTQIELPSHSGPIILEVMSIFYQDNLLYLTDPENCLPRQFVKLLQSPISPFQLFESPEFRYNYTILHCSSFFCPVVVVDSSDTLLESRLDPILCTKTSDFTFSSSLFSVVYENQMILTWSKPNCSKCEKEGKMCKLKNNGTEDDEIECFDRYHKPTKKILLYVTVGFVGLVLVALILAACLHLYFYFKLKGEDEVRIEKFLEDYRTFNPARFSYADIKRITNDFREKLGEGAHGAVFKGKLSNEIFVAVKMLNNAEGDGKEFINEVKAMGKVHHINVVRLVGFCADGCYRALVYNFFHNGSLQNFITRPDDMNRFLGWEMLHQIAIGIAKGIEYLHMSCDQRILHFDINPHNVLLDDKFIPKITDFGLAKLCSKNESIVSVTAARGTLGYIAPEVFSRNFGNVSYKVDIYSYGMLLLEMVGGRKNISQLSEENFQVLYPEWIHNLLEGRDMQVKIEGAGDDRILKKLAIVGLWCIQWHPINRPSIKVVLQMLESLEEENLIVPPNPFNSTTLGIGEIPIKYSTLELESIHE 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00954 596 PANTHER RUST RESISTANCE KINASE LR10-RELATED 18 596 IPR045874 GO:0004672
Tsu01g00954 596 Pfam Wall-associated receptor kinase galacturonan-binding 23 95 IPR025287 GO:0030247
Tsu01g00954 596 Gene3D Phosphorylase Kinase; domain 1 262 361 - -
Tsu01g00954 596 ProSiteProfiles Protein kinase domain profile. 287 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00954 596 ProSitePatterns Protein kinases ATP-binding region signature. 293 315 IPR017441 GO:0005524
Tsu01g00954 596 Pfam Protein kinase domain 290 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00954 596 PANTHER RECEPTOR-LIKE KINASE 18 596 - -
Tsu01g00954 596 Gene3D Transferase(Phosphotransferase) domain 1 362 567 - -
Tsu01g00954 596 SUPERFAMILY Protein kinase-like (PK-like) 269 558 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00954 Tsu-Chr1 8693913 8696126 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00954 250 584 Receptor kinase-like Gene Family AT1G66980 46.647 3.09e-94 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g00954 Pkinase 2.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00954 - - aip:107619931 627.861