Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00953 ATGCAGAGGGCCAAAGTTCTGAtacctgcgcgccgcgcagaggATGCCACGCGCCGCGCAAGCTTATACGTGAAGAAGAGGAAAGTAGGCTCTGATGTCTGCGCGCCGAGCAGATTCATAGTTCATCATGCGCGCCGCGCAGATTCATCGTACGCGCCACGCAGAGACATAAAAAGGATCACAAACAATTTCAAGAATGAACTTGGACAAGGAGGATATGGAACGGTGTACAAAGGTAAACTATCAGGCGACATATATGTCGCGGTCAAGCTTTTGAAAACTTCCACAGGAAACGGACCCGGGTTCATCAATGAAGTAGGAACAATGAGTCAAATTCATCATGTCAACGTTGTTCACTTAGTAGGCTTTTGCGCCGATGGACACACACGAGCTCTAGTTTACGAGTATTTACCAAATGGTCCGTTGCAGAAATTCATTTCCACAACGGATTTCAAAAACCATTTTTTGAGTTGGGAGAAGTTACAAGAAATTGCACTTGGGATAGCGAAAGGTATTGAGTATCTTCACCAAGGATGTGACCAAAGGATACTTCACTTCGATATAAAACCGCACAATATATTACTTGACAATAACTTCACTCCCAAGATATCTGATTTTGGTTTGGCTAAGCTTTGTTCTAAGGATCAGAGTGCGGTCTCCATGACTGCGGCTCGGGGGACTATTGGTTATATAGCACCGGAAGTTTTTTCTAGGAATTTTGGGAATGTATCGTATAAGTCTGATGTGTATAGTTTTGGAATGTTGTTGCTCGAGATGGTTGGAGGAAGGCAAAACGTCGATGTTGTAGAAAAGAGAAGTGGTTTAGGGCTTCTCAATCCAAGCCCAATTTTCAATCGGCAAAATACCCAAGTACCAGAAGTTCAACAGAATCAGCCCGCTAGAAGGAACCCACAGTCCTACCAACCAACGCAGTTCCATGAGGACGAGTATCGACCTCAAAATAATGTTGCTATTGATATGCCTGATGAGACATTCTTCAATGATCTCCGGCATGATTCATTTGTGCAAACAATGATGACAGGGGACGAGCTTGTAATTCCCGGTTTTACGAACCATACTCATGATTCCACCGCTGCTTGGAATCAAAGTGGCGAAAATTCATTAAGCGGCGggattaatattaataatggtGGCGAGTTTAATATTCACGGCGGGACAAATATGAGTCAAATCGGTGGCAATGGTCCAAATGAAATTAATGTAAACCGCGGCGGAAGGACAAGCGCCGGAAGTGCAAGTGGTGGAAGGACAAGTGGCGGAAGGGCAAGCGCCGGAAGAACAGCAAGAGGAAGAGCCTTCGCCGGCTCAAACCTCTGCATCAACTATTTTCGGCGTCGTTTCGATCGCCACAAACATGGATGGAGGGTTAGTTTGATGTTTTTAGGAATTGCGTCTGTTCGTTTCTTCCTCTCCGCAACGGGTTGTGAGACAGAAGTTAGGTTCTTTCAAGGGTTCATCATATTTTTGCTGGATACCGTTGGCTACAATAATTATAATAGGTCAAGAACCTTAAGCTATCATCGAGATGATGTCTTTACACCAATCAAAGACAAAGACAGTGCGAATCGCGATACAATATGGCTTGGAGACtcaaaagttgaagaaaatatgATGAGTTTCATTGGAAAAAAGAagcaattttgttttttgtggaGATCATTTTGTGGGTTGGACTTTCAAATGTTTATGGGTGGTGGTTGCTTTCTTCACTTGAGCTGCATGGTTATTTGTCCTGAGACAAAACTTCTCAAGGAGATGCTTCTAGACTCCACTGCCCTTGACAAAAACGAATTCTCCGAATCGAGACACAAATGA 1836 0.4216 MQRAKVLIPARRAEDATRRASLYVKKRKVGSDVCAPSRFIVHHARRADSSYAPRRDIKRITNNFKNELGQGGYGTVYKGKLSGDIYVAVKLLKTSTGNGPGFINEVGTMSQIHHVNVVHLVGFCADGHTRALVYEYLPNGPLQKFISTTDFKNHFLSWEKLQEIALGIAKGIEYLHQGCDQRILHFDIKPHNILLDNNFTPKISDFGLAKLCSKDQSAVSMTAARGTIGYIAPEVFSRNFGNVSYKSDVYSFGMLLLEMVGGRQNVDVVEKRSGLGLLNPSPIFNRQNTQVPEVQQNQPARRNPQSYQPTQFHEDEYRPQNNVAIDMPDETFFNDLRHDSFVQTMMTGDELVIPGFTNHTHDSTAAWNQSGENSLSGGININNGGEFNIHGGTNMSQIGGNGPNEINVNRGGRTSAGSASGGRTSGGRASAGRTARGRAFAGSNLCINYFRRRFDRHKHGWRVSLMFLGIASVRFFLSATGCETEVRFFQGFIIFLLDTVGYNNYNRSRTLSYHRDDVFTPIKDKDSANRDTIWLGDSKVEENMMSFIGKKKQFCFLWRSFCGLDFQMFMGGGCFLHLSCMVICPETKLLKEMLLDSTALDKNEFSESRHK 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00953 611 ProSiteProfiles Protein kinase domain profile. 62 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00953 611 Gene3D Transferase(Phosphotransferase) domain 1 137 316 - -
Tsu01g00953 611 Gene3D Phosphorylase Kinase; domain 1 42 136 - -
Tsu01g00953 611 MobiDBLite consensus disorder prediction 395 434 - -
Tsu01g00953 611 PANTHER RUST RESISTANCE KINASE LR10-RELATED 55 273 IPR045874 GO:0004672
Tsu01g00953 611 MobiDBLite consensus disorder prediction 395 427 - -
Tsu01g00953 611 SUPERFAMILY Protein kinase-like (PK-like) 48 269 IPR011009 -
Tsu01g00953 611 MobiDBLite consensus disorder prediction 284 311 - -
Tsu01g00953 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Tsu01g00953 611 SMART serkin_6 62 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00953 611 Pfam Protein kinase domain 65 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00953 611 ProSitePatterns Protein kinases ATP-binding region signature. 68 90 IPR017441 GO:0005524
Tsu01g00953 611 PANTHER RECEPTOR-LIKE KINASE 55 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00953 Tsu-Chr1 8679019 8689775 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00953 50 263 Receptor kinase-like Gene Family AT1G66910 57.477 1.38e-79 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g00953 Pkinase 1.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00953 - - jre:109022329 363.614