Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00950 ATGATCCTCCTAAACCCTCTTCTTTGCCTAGCAGAAACAAATCACCAATGTCACCTTTCATCTTGTGGCAACATACAAAACATCACCTACCCTTTTCGTCTAAAAGGCGATCCCGAAAACTGCGGAGATCCAAATTATGAACTTTCATGTGAGAACAATCAAACAATACTAAATCTATATAATGGAAAGTACTTTGTAGAAGCCATCAACTACAATAATTCCACAATAAGAGTAACAGATTCAGGTCTCAACAAAGAAAATTGCTCTTCAACTCCTCTCTACACTTTAACAAATGAAAATTTCACAACTGAAAAACTATATAGCTTGTTAAATGATAATAACTTAGAAACCATAGCATTTATAAATTGTGCAGCTTCAATTAATTCTCCTCTTTACATTGATACTTCATCTTGTATCAAAGGATTAATCAACTCTTCCAATTATGCTGTGCTTGGTGAGTTGAAGTTATCTGAGTTGGAAGATTCATGCAGCATACTtgtgatgattatgatgatgactTCAAATTTGAACAAAGGTGACAATAAATTTTCATATGTGAATATTCATAAGCAACTTGTTTATGGTTTGGAGCTTTCTTGGCATGAGATATTCTGCAAAGAGTGTCAAGGTAGAGGGTACTGTAAGTTGAACAATAACAATGAAGTCATTGGTTGTTCAAGAACTAAACCTTGTAGTGATGACTATACATCCTCTTTTAAATGTCCTAACAAACTTGGAGCTATCATTGGACTAATTCTTCTAATAAGAATCATAGGAGGTGTAGTATTTATTCCCATGTATATGATATATAAATGGAGAAGGAGACATTTATCTGCATATGATTCAGTTGAAGAGTTTCTTAAAACTCATAACAATCTTATGCCAATAAGATACTCTTACTCAgacattaaaaaaatgacaaaaggATTCAAGGATAAACTTGGTGAAGGTGGCTATGGTTCTGTTTACAAAGGAGAACTTCGCAACGGTCACTTCGTAGCAATCAAGATGTTAGGTGGAAAATcaagagcaaatggacaagaatTCATCAATGAAGTTGCTACCATCGGAACAATCCATCATGTTAATGTTGTTCGCCTTATTGGATTTTGTGTTGAGAAAACAAAAAGAGCACTTGTTTATGAGTTCATGCCTAATGGTTCATTAGACAAACATATTTTCTCTAGAGAAAGAATGAATATTCCTTTGAGTTGTGAAAAAATGTTTGATATAGCTCTTGGTGTAGCGCGCGGTATTGAATATCTACATAGAGGATGTGACATGAGGATTTTGCATTTTGACATTAAGCCTCATAATATTCTTCTTGATCTGAATTTCAGTCCCAAGGTTTCGGATTTTGGACTAGCAAAGTTATATCCAATTGATAATAGCATTGTGTCGCTTACCGCTGCAAGAGGAACTATGGGATACATGGCTCCGGAATTGTTCTATAAGAACATTGGAGGAGTATCGTACAAAGCTGATGTTTACAGTTTTGGAATGTTGTTAATGGAAATGGCAAGTAGGAGAAGGAACATGAATGAGGGTGAAGATCGTAAGAGTCAAATGAAACCAAGTGATCGTCCTTCGATGAACAAAGTGGTTGAGTTGCTTGAAGGGGATGTTGAGTCCTTGGAAATGCCTCCTAAGCCATTTCAAACTCCAAAAGGAATGCCTGTACAAGGCATTGGACAATTCCGAAATCTACCTTGGTTGCTACCTGGAGATTCTACAAACTCACTTACCATTGTTATAAATCGACGTTAA 1767 0.3447 MILLNPLLCLAETNHQCHLSSCGNIQNITYPFRLKGDPENCGDPNYELSCENNQTILNLYNGKYFVEAINYNNSTIRVTDSGLNKENCSSTPLYTLTNENFTTEKLYSLLNDNNLETIAFINCAASINSPLYIDTSSCIKGLINSSNYAVLGELKLSELEDSCSILVMIMMMTSNLNKGDNKFSYVNIHKQLVYGLELSWHEIFCKECQGRGYCKLNNNNEVIGCSRTKPCSDDYTSSFKCPNKLGAIIGLILLIRIIGGVVFIPMYMIYKWRRRHLSAYDSVEEFLKTHNNLMPIRYSYSDIKKMTKGFKDKLGEGGYGSVYKGELRNGHFVAIKMLGGKSRANGQEFINEVATIGTIHHVNVVRLIGFCVEKTKRALVYEFMPNGSLDKHIFSRERMNIPLSCEKMFDIALGVARGIEYLHRGCDMRILHFDIKPHNILLDLNFSPKVSDFGLAKLYPIDNSIVSLTAARGTMGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASRRRNMNEGEDRKSQMKPSDRPSMNKVVELLEGDVESLEMPPKPFQTPKGMPVQGIGQFRNLPWLLPGDSTNSLTIVINRR 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00950 588 ProSitePatterns Serine/Threonine protein kinases active-site signature. 430 442 IPR008271 GO:0004672|GO:0006468
Tsu01g00950 588 Gene3D Phosphorylase Kinase; domain 1 291 383 - -
Tsu01g00950 588 SUPERFAMILY Protein kinase-like (PK-like) 289 538 IPR011009 -
Tsu01g00950 588 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 522 560 - -
Tsu01g00950 588 MobiDBLite consensus disorder prediction 512 531 - -
Tsu01g00950 588 MobiDBLite consensus disorder prediction 512 526 - -
Tsu01g00950 588 PANTHER RUST RESISTANCE KINASE LR10-RELATED 248 522 IPR045874 GO:0004672
Tsu01g00950 588 Pfam Wall-associated receptor kinase galacturonan-binding 17 80 IPR025287 GO:0030247
Tsu01g00950 588 Gene3D Transferase(Phosphotransferase) domain 1 384 544 - -
Tsu01g00950 588 SMART serkin_6 308 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00950 588 PANTHER RUST RESISTANCE KINASE LR10-RELATED 2 243 IPR045874 GO:0004672
Tsu01g00950 588 PANTHER RUST RESISTANCE KINASE LR10-RELATED 522 560 IPR045874 GO:0004672
Tsu01g00950 588 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 248 522 - -
Tsu01g00950 588 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 2 243 - -
Tsu01g00950 588 Pfam Protein kinase domain 311 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00950 588 ProSiteProfiles Protein kinase domain profile. 308 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00950 588 ProSitePatterns Protein kinases ATP-binding region signature. 314 336 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00950 Tsu-Chr1 8659851 8662271 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00950 1 566 Receptor kinase-like Gene Family AT5G38260 34.076 1.27e-92 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g00950 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00950 - - hbr:110665770 627.476