Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00949 ATGACAAAAGGTTTCAAGATAAAATTGGGTGAAGGAGGTTATGGAGATGTGTATAGAGGAAATCTAATAAGTGGACCATTTGTAGCCATAAAGATGTTGAAGATAAAATCAAATGCTACTGGGCAAGATTTCATAAGTGAAGTTGCAACCATAGGAAGAATATACCATTCAAATGTGGTAAGACTAATTGGGTTTTGTGTCGAAGGATCAAAACGTGCTCTTGTCTATGAATACATGCCCAATGGCTCACTTGACAAATATATCTTCAACAAAGAGGGAGTTATATCTTTAACTTGCAATCAAATATATGAGATATCTCTTGGAGTGGCTCGTGGAATTTCTTATCTTCATGAGGGTTGTGATAtgcaaattttacattttgataTTAAGCCTCATAATATCCTTCTTGACGAAACTTTCATCCCTAAAGTTTCGGACTTTGGTCTTGCAAAGCTTTATCCTATTGACAATAGCATTGTCACTTTGACAGCAGCCAGAGGAACAATTGGATACATGGCTCCTGAATTGTTCTACTATAATATCGGAGGAATATCATATAAGGCTGATGTGTATAGCTTTGGAATGCTTTTGATTGAAATGGCAAGTAGGAGAAGAAATTTAAATCCACATGCTGAGAATTCAAGTGAACTTTACTTTCCCTTTTGGATTTATGATCAATTGGTTAAAAATAGAGAGAGGGAAATGGAAGATATTATCATGGAAGAaattaatgatgttttgaaGAAAATGTTCATAGTTGCACTTTGGTGTATACAGTTGAAACCCGTTGATCGTCCCTCAATGAACAGAGTAGTGGAGATGCTTGAAGGAGatattgaaaatattgaaatgCCTCCAAAGCCTTTACTATATCCTCATGAAACAATTCAAGAGAATCTTGATATCAACTCAAATGAAACTGTATCAGATGTTGGCTCTACCAGTTATGTGGAGGAAATTGCAACTAATCCTTTATTGAAGTATTCAGCTTAA 993 0.3404 MTKGFKIKLGEGGYGDVYRGNLISGPFVAIKMLKIKSNATGQDFISEVATIGRIYHSNVVRLIGFCVEGSKRALVYEYMPNGSLDKYIFNKEGVISLTCNQIYEISLGVARGISYLHEGCDMQILHFDIKPHNILLDETFIPKVSDFGLAKLYPIDNSIVTLTAARGTIGYMAPELFYYNIGGISYKADVYSFGMLLIEMASRRRNLNPHAENSSELYFPFWIYDQLVKNREREMEDIIMEEINDVLKKMFIVALWCIQLKPVDRPSMNRVVEMLEGDIENIEMPPKPLLYPHETIQENLDINSNETVSDVGSTSYVEEIATNPLLKYSA 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00949 330 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Tsu01g00949 330 Gene3D Transferase(Phosphotransferase) domain 1 80 284 - -
Tsu01g00949 330 SMART serkin_6 3 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00949 330 Gene3D Phosphorylase Kinase; domain 1 9 79 - -
Tsu01g00949 330 Pfam Protein tyrosine and serine/threonine kinase 7 275 IPR001245 GO:0004672|GO:0006468
Tsu01g00949 330 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 306 IPR045874 GO:0004672
Tsu01g00949 330 SUPERFAMILY Protein kinase-like (PK-like) 8 276 IPR011009 -
Tsu01g00949 330 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Tsu01g00949 330 PIRSF TyrPK_CSF1-R 86 324 - -
Tsu01g00949 330 PIRSF TyrPK_CSF1-R 24 95 - -
Tsu01g00949 330 ProSiteProfiles Protein kinase domain profile. 3 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00949 330 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 1 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00949 Tsu-Chr1 8658181 8659173 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00949 1 315 Receptor kinase-like Gene Family AT5G38260 51.084 1.26e-100 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g00949 PK_Tyr_Ser-Thr 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00949 - - cam:101508554 585.874