Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00943 ATGATTCTCATCTTGGTTTGCAATTTCAACACAGAGATATATGGCTGTAGCGGAAGGGATTTCAGGTGTGGACATAACGGTCCACCAATCCGATTTCCCTTCCGACTTAAAGACAAAGAAACTGAACAAAGTTGCGGTTATACCGGCTTTGATCTTACTTGTTCAGACACAAACAAAACTCAAATTGAACTCCCTTCGCATTCTGGTCCAATTATACTTGAAGTCATGGACATATTTTATCAACTCAACCTTATAGACTTAACTGACCCAGAAAATTGTCCTCCTAGACAGTTTGTAAAGCTACTTCAATCACCAATTTCTCCTTTTCAATTCGTTGAGAGTCTTGAATTCAGGCAAAACTTCACCATCCTCCATTGTAGTTCATTATTCTGCCCGGTGGTTTTTGTTGAATCTAGTGATACACTCCTTAAATCTGGTTTGGACCCAATACTCTGCACCAAAACTCTAGATATTTCTTCAAAGGTGTTCCTGCCGGGGGTTTCTGAGAACAGACCATTGACTTTGACATGGTCCAAACCCAATTGTAGCAAATGTGAAAAAGAAGGCAAGATGTGTAAACTTAAAAACAACAGAACTCAAGACAGCGAGATAGAATGTTTTGACCGTCATCACAAACCAACTAAGAAGATACTTTTATATGTCACAGTTGGATTCGTTGGTTTGGTTCTGGTGGCGCTGATTCTTGCAGCATGTTTGCATCTCCATAGctattttaaattgaaaggTGAAGATGAGGCTAGAATTGAAAAGTTCTTGGAGGATTATAGGACGCTCAACCCTGCGAGATTCTCATATGTTGATATAAAGAGGATTACAAATAATTTTAGGGAACAGTTAGGTGAAGGAGCTCATGGAGCAGTTTTCAAAGGTAAACTATCTAATGAAATTGTTGTGGCCGTGAAGATGCTAAACAACGCAGAGGGCGATGGAAAAGAGTTCATTAACGAAGTGAAAGCTATGGGAAAAGTTCATCACATCAATGTGGTTCGTTTGGTTGGATTTTGTGCTGATGGATGCTATCGTGCTCTTGTTTATAATTTCTTTCATAACGGTTCATTACAAAACTTCATAACCCGACCTGATGACATGGAACGCTTTCTTGGTTGGGAGATGCTACAACAAATTGCTATCGGCATAGCCAAAGATTTTGGTTTGGCTAAACTGTGCTCTAAAAATGAAAGCATAGTGTCGGTAACTGCTGCAAGAGGGACTTTGGGTTACATTGCACCAGAAGTATTTTCAAGAAACTTTGGAAATGTATCGTATAAAGTTGACATATATAGTTATGGGATGTTACTACTCGAAATGGTTGGAGGAAGAAAGAATATAAGCCAATTGTCTGAGGAAAATTTTCAAGTTCTATATCCAGAATGGATTCACAATCTGCTCGAAGGGCGAGATATGAAAGTGAAAATTGAGGGAGCAGGAGATgatagaattttaaaaaaacttgcAATTTGTACAAGTCCACCCAGTAAGGTTGTGGATAGATATTATACAGATGCTGCTTCATGCTTGGATCAACACACATACGTTATTGTTGGTGACCCACAATTTGGAATATTGGAGCCTCAATGCCGTGTTAAGCGTATTACCCTCACATCCTTATACGAGGACAACGACAACGATGACACTAACATCATAGGTAATGTTTCGTCGTACTTTGATATTCACAAGGCGTTACTCCATGGATTTGAAGTTTCTTGGATGCAAGCCTCTTGTTCTTGTGATTATTGCTACCTCAATGACACAGTTGGCGAGATTCAGTGTTACATAACCCCTGACTGTTATTTTAACTCTTGTGGTAAGACCAATTCGTACAGAAATAATTTTGACACTCGGAATTAA 1869 0.3847 MILILVCNFNTEIYGCSGRDFRCGHNGPPIRFPFRLKDKETEQSCGYTGFDLTCSDTNKTQIELPSHSGPIILEVMDIFYQLNLIDLTDPENCPPRQFVKLLQSPISPFQFVESLEFRQNFTILHCSSLFCPVVFVESSDTLLKSGLDPILCTKTLDISSKVFLPGVSENRPLTLTWSKPNCSKCEKEGKMCKLKNNRTQDSEIECFDRHHKPTKKILLYVTVGFVGLVLVALILAACLHLHSYFKLKGEDEARIEKFLEDYRTLNPARFSYVDIKRITNNFREQLGEGAHGAVFKGKLSNEIVVAVKMLNNAEGDGKEFINEVKAMGKVHHINVVRLVGFCADGCYRALVYNFFHNGSLQNFITRPDDMERFLGWEMLQQIAIGIAKDFGLAKLCSKNESIVSVTAARGTLGYIAPEVFSRNFGNVSYKVDIYSYGMLLLEMVGGRKNISQLSEENFQVLYPEWIHNLLEGRDMKVKIEGAGDDRILKKLAICTSPPSKVVDRYYTDAASCLDQHTYVIVGDPQFGILEPQCRVKRITLTSLYEDNDNDDTNIIGNVSSYFDIHKALLHGFEVSWMQASCSCDYCYLNDTVGEIQCYITPDCYFNSCGKTNSYRNNFDTRN 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00943 622 Pfam Protein kinase domain 389 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00943 622 PANTHER RECEPTOR-LIKE KINASE 389 494 - -
Tsu01g00943 622 PANTHER RECEPTOR-LIKE KINASE 14 388 - -
Tsu01g00943 622 ProSitePatterns Protein kinases ATP-binding region signature. 286 308 IPR017441 GO:0005524
Tsu01g00943 622 PANTHER RUST RESISTANCE KINASE LR10-RELATED 389 494 IPR045874 GO:0004672
Tsu01g00943 622 PANTHER RUST RESISTANCE KINASE LR10-RELATED 14 388 IPR045874 GO:0004672
Tsu01g00943 622 Gene3D Phosphorylase Kinase; domain 1 255 354 - -
Tsu01g00943 622 ProSiteProfiles Protein kinase domain profile. 280 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00943 622 Gene3D Transferase(Phosphotransferase) domain 1 388 517 - -
Tsu01g00943 622 Pfam Wall-associated receptor kinase galacturonan-binding 16 88 IPR025287 GO:0030247
Tsu01g00943 622 SUPERFAMILY Protein kinase-like (PK-like) 262 466 IPR011009 -
Tsu01g00943 622 Pfam Protein tyrosine and serine/threonine kinase 282 386 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00943 Tsu-Chr1 8622088 8627315 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00943 197 474 Receptor kinase-like Gene Family AT4G18250 34.069 1.45e-54 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g00943 PK_Tyr_Ser-Thr 1.5e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00943 - - aip:107619931 506.523