Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00939 ATGTACCAAATCAACCTTGTTACTATGTCCTCATTAGATTTTCCTGGTGTAAGAGATGATGTACCAAATCGACCTCTTTCATACGAGCAAATTCATGGAATGCTACTCTATGAATTTGAGTTGTCGTGGAAACGTGGTGCTTGTAGAGATTCTTGCGACGATAATCAACAGTGCTACTTTAATCCAACCACTGCAGATTTTGAATGTTATGAATCAGCTGATTTTTGCACTTATCCATTGGGAAGTGAAGTCCTCAAAAGATGCGACCAAGTATCAAAGCGGCGCATATTAGTTGAAGATGTAATATTTGGCTTTGTTAAAGGAGTATTACAAATATTTGGCATAACAAAAAGCTCTGAATTATCGGAGCCAGCTTTAGATTCTAAAACTGCCATCGAGATAGGAAGAGTGACAGGAAGATACCTTTTGCCATTATTTATGTCGAGATTTGTCCTAGGCCTTGTGGTTTTCTTCATACTATTGATATATACATGTCGGAAAAAGCATATATCAATGTATGAAAATATTGAAGTTTTTCTTCAAGGGAGTACCTTGACGCCAATTAGGTATTCgtacaaagaaataaaaaccaTGACTAGAAGTTTTAGAGATAAGTTAGGCGAAGGAGGTTTTGGTGCTGTTTATCAAGTAAAGCTACGGAGCGGACCATTTGTGGCCATAAAAATGTTGAGTAAATCGAAGGGTAACGGACAAGATTTCATTAATGAAGTTGCAACTATAGGAAGAATACATCACACAAATGTGGTTCGACTTATTGGATTTTGTGTTGAGGGGTCTAAACGTGCTCTTGTTTATGAATTTATGCCCAATGGTTCCCTTGATAAGTATATTTCTTCTAGAGAGGATGCTCTCTCTCTTACTTATAAGCAAATGTATGAGATATCTCTTGGAGTGGCTCGTGGAATTGCTTATTTGCATCAAGGTTGTGAAATGCAAATCTTGCATTTTGACATCAAGCCCCATAACATTCTTCTCGATGAAAACTTTATCTCCAAAGTTTCAGACTTCGGTCTTGCAAAGCTTTATCCTAATGATGTTAGCATTGTCACTCTGACAGCAGCAAGAGGAACAATTGGGTATATGGCTCCTGAATTGTTCTACCAAAATATTGGAGGAATATCCTACAAGGCTGATGTATATAGCTTTGGAATGCTTTTGATGGAAATGGCAAGTAAGAGAAGAAATTTGAATCCACATGCAGATCGTTCAAGCCAACTTTTCTTTCCCTTTTGGATCCACAATCAATTGATTGAGGAAAAGGACATAGAAATGGATGAACTTACTAACGAGGAAATGATTAATGTGAAAAAGATGTTCATAACTGCATTATGGTGCATACAATTAAAACCAAGTGATCGTCCTTCAATGAACAAAGTAATAGAGATGCTTGAAGGAAATATTGAGAACATGGAAATGCCTCCAAAACCTTCTCTATATCCAAATGAAACTTTTCAGAATGATCTTGAAGTAACCTCTGAAGAAATTGAGCCAGATACAGATGATGACTCTGTTAGTTTCTTGAAGGAAACAAACTCATAG 1560 0.3641 MYQINLVTMSSLDFPGVRDDVPNRPLSYEQIHGMLLYEFELSWKRGACRDSCDDNQQCYFNPTTADFECYESADFCTYPLGSEVLKRCDQVSKRRILVEDVIFGFVKGVLQIFGITKSSELSEPALDSKTAIEIGRVTGRYLLPLFMSRFVLGLVVFFILLIYTCRKKHISMYENIEVFLQGSTLTPIRYSYKEIKTMTRSFRDKLGEGGFGAVYQVKLRSGPFVAIKMLSKSKGNGQDFINEVATIGRIHHTNVVRLIGFCVEGSKRALVYEFMPNGSLDKYISSREDALSLTYKQMYEISLGVARGIAYLHQGCEMQILHFDIKPHNILLDENFISKVSDFGLAKLYPNDVSIVTLTAARGTIGYMAPELFYQNIGGISYKADVYSFGMLLMEMASKRRNLNPHADRSSQLFFPFWIHNQLIEEKDIEMDELTNEEMINVKKMFITALWCIQLKPSDRPSMNKVIEMLEGNIENMEMPPKPSLYPNETFQNDLEVTSEEIEPDTDDDSVSFLKETNS 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00939 519 Gene3D Phosphorylase Kinase; domain 1 177 274 - -
Tsu01g00939 519 ProSiteProfiles Protein kinase domain profile. 200 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00939 519 PANTHER RUST RESISTANCE KINASE LR10-RELATED 23 500 IPR045874 GO:0004672
Tsu01g00939 519 Pfam Protein kinase domain 204 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00939 519 SUPERFAMILY Protein kinase-like (PK-like) 185 471 IPR011009 -
Tsu01g00939 519 ProSitePatterns Protein kinases ATP-binding region signature. 206 228 IPR017441 GO:0005524
Tsu01g00939 519 SMART serkin_6 200 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00939 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 320 332 IPR008271 GO:0004672|GO:0006468
Tsu01g00939 519 Gene3D Transferase(Phosphotransferase) domain 1 275 482 - -
Tsu01g00939 519 MobiDBLite consensus disorder prediction 500 519 - -
Tsu01g00939 519 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 23 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00939 Tsu-Chr1 8592031 8594424 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00939 189 513 Receptor kinase-like Gene Family AT5G38280 49.096 5.13e-105 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g00939 Pkinase 2.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00939 - - mtr:MTR_1g027830 632.869