Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00938 ATGTATGTGGACACATCTTCCTGTGTCAAATGGAATTCCGAAGGCCATGTTTATGCGATCGCTGGTGACATAAAGACTGGGAGCTTAAATGTTGGCTGTCAGGTGAAGCTTGTTGCTATGTCATCAGCTTACGCTTTTAAGCCCAATTTTGTGAATGATGATATTGGACAAAATTATTCCTATATGGAAATTCATGAAATGCTAAGCTATGGATTCTACGTTTCGTGGATCAGACGTGGGTGTGAAGATTCTTGTGACGTTAACCAACAAAACTGCTACTTAAGTCAAAGAACTGGAGGTCTTGAATGTGAATATGATTATTGCAAAACTCCATTGGGACATTTCATGAGATGTGAACATTTGTCAAAGCTGCGCATATTAATGGAAGATATTATACTTGGCATTATAAAAgGACTACTACAAATAATTGGCACGAGTACAAAAAGTTCTCAATTAACCGGTGGAACTTTTGAACTATCTGACAAAGTTGCTGATTATAAAAGTGCGATTGAATTAGGAAAATTCAGTGGTAGATATCTCTTGCCTTCATTTATAGTGAGATTTACTTTGGGCCTTATAGTTTTCTTTGTACTACTGATATATACATGTCGAAGAAGACATATATCAATATATGACAATATTGAAGTTTTTCTTCGAGGGAGTACTTTGATACCAATAAGGTATTCATACAAAGATATTAAGAAGATGACTCAAAATATGAAGGACAAACTAGGTGAAGGAGGTTTTGGTTCTGTTTATAAAGGCAAGTTAAGCAGTGGACCATTTGTGGCCATAAAGATGTTGGGTAAATCTAAGGGTAATGGACAAGATTTCATTAGTGAAGTCGCAACCATAGGAAGAATACACCATGCTAATGTGGTGCGACTTATCGGTTTTTGTATTCAGAGATCGAAACGGGCTCTTGTTTATGAATTCATGCCCAATGGCTCTCTTGATAAGTATATTTCTACTAAAGAGGATGCTATCTCATTAACTTCAAAGAAAATGTATGAGATATCTCTTGGAGTGGCTCGTGGAATTGCTTATTTGCATCAAGGTTGTGACATGCAAATCTTGCATTTTGATATCAAACCCCACAACATCCTTCTTGACGAGAACTTTATCCCCAAGGTTTCAGATTTTGGTCTTGCAAAACTTTATCCTAATGACAATAGTATTGTCACTTTAACTGCCGCACGTGGAACAATTGGCTACATGGCTCCCGAATTGTTCTACAAAAATATTGGAGGAGTGTCCTACAAGGCCGATGTGTATAGCTTTGGAATGCTTTTGATGGAAATGGcaaacaagagaagaaatttaAATCCAAATGCAGATCGTTCAAGTCaaattttctttccattttggATTTATAATCAATTGATTGAAGAAAGAGAGATTGAAATGGATGAAATTActgatgaagaaaaaaatatggtgAAGAAAATGTTCATAATTGCGTTATGGTGTATACAATTAAAACCAAGTGACCGTCCTGCAATGAACAAAGTAATAGAGATGCTTGAAGGAAATATCGAAGATATTGAAATGCCTCCAAAGCCTTCTttttgtccaaatgaaatgattCAAGAAGTCCTAGAAGTCAACTCTAATGATATTCAATCAGAAACTGATACAGAAACTGATACTGATTCTGTTAGTACTATTGAGGAAGATACAACAGAGCCTTTATTGATGAACTCTGCCTAG 1710 0.3456 MYVDTSSCVKWNSEGHVYAIAGDIKTGSLNVGCQVKLVAMSSAYAFKPNFVNDDIGQNYSYMEIHEMLSYGFYVSWIRRGCEDSCDVNQQNCYLSQRTGGLECEYDYCKTPLGHFMRCEHLSKLRILMEDIILGIIKGLLQIIGTSTKSSQLTGGTFELSDKVADYKSAIELGKFSGRYLLPSFIVRFTLGLIVFFVLLIYTCRRRHISIYDNIEVFLRGSTLIPIRYSYKDIKKMTQNMKDKLGEGGFGSVYKGKLSSGPFVAIKMLGKSKGNGQDFISEVATIGRIHHANVVRLIGFCIQRSKRALVYEFMPNGSLDKYISTKEDAISLTSKKMYEISLGVARGIAYLHQGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPNDNSIVTLTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEMANKRRNLNPNADRSSQIFFPFWIYNQLIEEREIEMDEITDEEKNMVKKMFIIALWCIQLKPSDRPAMNKVIEMLEGNIEDIEMPPKPSFCPNEMIQEVLEVNSNDIQSETDTETDTDSVSTIEEDTTEPLLMNSA 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00938 569 Pfam Protein kinase domain 241 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00938 569 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 3 538 - -
Tsu01g00938 569 SUPERFAMILY Protein kinase-like (PK-like) 224 509 IPR011009 -
Tsu01g00938 569 MobiDBLite consensus disorder prediction 537 569 - -
Tsu01g00938 569 Coils Coil 458 482 - -
Tsu01g00938 569 Gene3D Transferase(Phosphotransferase) domain 1 313 518 - -
Tsu01g00938 569 Gene3D Phosphorylase Kinase; domain 1 221 312 - -
Tsu01g00938 569 SMART serkin_6 238 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00938 569 ProSitePatterns Serine/Threonine protein kinases active-site signature. 358 370 IPR008271 GO:0004672|GO:0006468
Tsu01g00938 569 ProSitePatterns Protein kinases ATP-binding region signature. 244 266 IPR017441 GO:0005524
Tsu01g00938 569 ProSiteProfiles Protein kinase domain profile. 238 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00938 569 PANTHER RUST RESISTANCE KINASE LR10-RELATED 3 538 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00938 Tsu-Chr1 8582078 8591556 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00938 227 542 Receptor kinase-like Gene Family AT5G38280 51.084 2.51e-109 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g00938 Pkinase 2.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00938 - - mtr:MTR_1g027830 733.021