Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00936 ATGGAATCATTGTTATGCTTTCTCCAAATTGTTTTGGTTGTTTTGATACTACTGtatcaaaatcatcaaacatGTGATGCAATAATTACTAATAACCAAGCTTATTGTCCACCTTCTTCGTGCGGAAAAATCACAACCATAAAACATCCGTTTCGACTTAAGGGTGATCCAACATCATGTGGTGATCCGAGGTACGAGTTATCTTGCGAAAACAACATGACAGTGCTAACTCTGTTTTCGGGTAAATACTATGTGAAGTCAATTGACTATAAATACTACATGATTAGTCTACTAGATCCCGGAATTCAAGAGGGTGACTTCTCCTCCATGCCTCTGTATTTCTTAACTGAATCCAATTTTACAAGTTCATACAATTATAGCTACCACCAGGATCTATACGAAATCGATCGCAGTCGAAGTTTGTTCCAACACATAATATACTTGAACTGTAGCAAGCCGGTGAAGAACGATCATGTGTATGTGGATACATCTCCCTACGTCAAATGGAATTCCAAAGGCCATGTTTATGCTATCTCTGGAGACTTGAGTGTTGGGAAATTAAATGTTGATTGCCACGTGAAGCTTGTTGCTACGTCTACAGATTTTAATACATCATATTTTTCGTACCCGGAAATTCATGGAATGCTTAGCTATGGATTCGAGCTTTCATGGATGAGACGTGCTTGTGAAGATTCTTGTGACATGAGCCAACGGTTTTGCTACATGAATGGAACCAACGGAGATCTTGAATGTACATTTCAATATTGCACGACTCCATTGGGATTTGTAATCACATGTGAACATTTGTCAAAGCTGCGGATATTGATGGAAGATATTATACTTGGCATTGTCAAAgGACTACAAATAACCAACACGACAAAAAGTTCAAAATTATCAGCCGGAACCTATGATTTATTAACCAAAAAAGTTTATGACTCTAAAATTGGCATCGAGCTAGGAAGAATTAGTGGAAGGTATCTTTTGCCATCATTTATAGTGAGACTTACATTGGGCTTAATGGTTTTCTTTGTACTATTGATATATACATGCCGAAGAAGACATATTTCAATTTACGAAAATATTGAAGTTTTTCTTCGTGGAAATACCTTGATGCCAATAACGTATTCATACAAAGATATAAAGAAGATGACTAGAAGTTTCAAGGATAAGCTGGGTGAAGGAGGCTTTGGTTCTGTTTATAAAGGAAAGTTAACTGGTGGACCATTTGTGGCCATAAAGATGTTGGGTAAATCTAAGGGTAATGGACAAGATTTTATTAGTGAAGTCGCAACCATAGGAAGAATACACCATGCTAATGTAGTGCGACTTATCGGTTTTTGTAATGAGAGATCGAAACGGGCTCTTGTTTATGAATTCATGCCCAATGGTTCTcttgataaatatatttctaCTAAAGAGGATGCTATCTCTTTAACTTCAAAGAAAATGTATGAGATATCTCTTGGAGTGGCTCGTGGAATTGCTTATTTGCATCAAGGTTGTGACATGCAAATCTTGCATTTTGACATCAAACCCCACAACATCCTTCTTGACGAGAATTTTATCCCCAAAGTTTCAGACTTTGGTCTCGCAAAACTCTATCCAAATGACAATAGTATTGTCACTTTAACTGCAGCCAGAGGAACAATTGGTTACATGGCTCCTGAGTTATTCTACAAAAATATTGGAGGGGTATCCTACAAGGCTGATGTGTATAGCTTTGGAATGCTTTTAATGGAAATGGCAAGTaagaaaagaaatttaaatCCAAATGCAGATCATTCAAGCCAACTTTTCTTTCCCATTTGGATTTATAATCAAATGGTTGAAGAAAGAGAGATAGAAATGGATGAAATTACTGAtgaggaaaaaaataatgtgaaGAAAATGTTCATAATTGCGTTATGGTGCATACAGTTAAAACCAAGTGATCGTCCTGCAATGAACAAAGTAATAGAGATGCTTGAAGGAAATATTGAAGATATTGAAATGCCTCCAAAACCTTCTTTCTATCCAACTGAAATTATTGAGGATATTGAATCAGAAACTAATAATACTGACTTTGGTTCTGTTAGTTTTATTGTGGAAGATACAACAAAGCCTCTATTGATGAATTCTGCTTGA 2124 0.354 MESLLCFLQIVLVVLILLYQNHQTCDAIITNNQAYCPPSSCGKITTIKHPFRLKGDPTSCGDPRYELSCENNMTVLTLFSGKYYVKSIDYKYYMISLLDPGIQEGDFSSMPLYFLTESNFTSSYNYSYHQDLYEIDRSRSLFQHIIYLNCSKPVKNDHVYVDTSPYVKWNSKGHVYAISGDLSVGKLNVDCHVKLVATSTDFNTSYFSYPEIHGMLSYGFELSWMRRACEDSCDMSQRFCYMNGTNGDLECTFQYCTTPLGFVITCEHLSKLRILMEDIILGIVKGLQITNTTKSSKLSAGTYDLLTKKVYDSKIGIELGRISGRYLLPSFIVRLTLGLMVFFVLLIYTCRRRHISIYENIEVFLRGNTLMPITYSYKDIKKMTRSFKDKLGEGGFGSVYKGKLTGGPFVAIKMLGKSKGNGQDFISEVATIGRIHHANVVRLIGFCNERSKRALVYEFMPNGSLDKYISTKEDAISLTSKKMYEISLGVARGIAYLHQGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPNDNSIVTLTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASKKRNLNPNADHSSQLFFPIWIYNQMVEEREIEMDEITDEEKNNVKKMFIIALWCIQLKPSDRPAMNKVIEMLEGNIEDIEMPPKPSFYPTEIIEDIESETNNTDFGSVSFIVEDTTKPLLMNSA 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00936 707 ProSitePatterns Protein kinases ATP-binding region signature. 391 413 IPR017441 GO:0005524
Tsu01g00936 707 PANTHER RUST RESISTANCE KINASE LR10-RELATED 10 682 IPR045874 GO:0004672
Tsu01g00936 707 Gene3D Transferase(Phosphotransferase) domain 1 460 665 - -
Tsu01g00936 707 SUPERFAMILY Protein kinase-like (PK-like) 370 656 IPR011009 -
Tsu01g00936 707 Pfam Wall-associated receptor kinase galacturonan-binding 36 99 IPR025287 GO:0030247
Tsu01g00936 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 505 517 IPR008271 GO:0004672|GO:0006468
Tsu01g00936 707 ProSiteProfiles Protein kinase domain profile. 385 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00936 707 Pfam Protein kinase domain 388 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00936 707 Gene3D Phosphorylase Kinase; domain 1 366 459 - -
Tsu01g00936 707 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 10 682 - -
Tsu01g00936 707 SMART serkin_6 385 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00936 Tsu-Chr1 8571797 8578435 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00936 375 686 Receptor kinase-like Gene Family AT5G38280 51.411 2.26e-107 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g00936 Pkinase 5.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00936 - - mtr:MTR_1g027830 924.08