Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00934 ATGGTGTGTATGTTATGTTCCATTTCAGCATCAGTACTGAGAAGAGGGATGGAATCATTTTTATGTTTCCTTCAAATTATGCTTATTACACTAATACTGcatcatcatcaaacatgtGATGCAGCtactaatagtaataataacCAAACATATTGCCCAACTTCTTCGTGCGGCAAAATCACAAACATAAAATATCCCTTTCGGCTTAAGAATGATCCAACAGCCTGTGGTGATCCGAGGTACGAGTTATCCTGTGAAAACAACATCACAACATTAACTCTGTTTTCTGGGAAATACTATTTGCAGGAAATTAATTACATCAATTACACAATTCGAGTAGTTGATCCCGGTATTGAAGAGGGTAATTGCTCCTCCATTCCTCGCTATTTCTTAACTACATCCAATTTCACAATGCTTTACACTTATGAGGACTATCACATGTATCCATATCAAATCGACTATCAGTTTGGGCTCGGGTACGGGTACATAATATACTTGAACTGTAGCAAACCAGTGGAGGACGATACTGAGTATGTGGATACATCGCCGTGTATAGTCAACTCCGACTCCAAAAGCTATGTTTATGCTTTTTCAGGGGCGAACTATTGGGAAGAGGATTATTCGAGATCCAGTAAGTACTTGTCAGTTGGGAGATTAAAAGATTATTGCCAAGTGAAGCTTGTTGCTATGTCTTCATTAGATTTTCCTGGTGTAAGAGATGATGTACCAAATCGACCTCTTTCATACGAGCAAATTCATGGACTGCTACTCTATGGATTTGAGTTATCGTGGATAAGTGGTGCTTGTAGAGATTCTTGCGGGGATAATCAACGATGCAACTTCAATGGAATCACTGCAGATTTTGAATGTCAATCAACTGATTATTGCACTTATCCATTGGGAATTGAAGTCGCCAAAAGATGCGACCAAGTATCAAAGCGGCGCATATTAGTTGAAGATGTAATACTTGGCATTGTTAAAGGAGTAGTACAAATATTTGGCATAACAAAAAGTTCTGAATCAACCGAGGCAGTTTTAGATTCTAAAACTGCTATTGAGATTGGAAGAGTAACAGGAAGATATCTTTTGCCAATATTGGTGTCTAGATTTGTCCTAGGCCTTCTGGTTTTCTTTGTGCTATTGATATATACGTATCGGAAAAGGCATATATCGATGTATGAAAATATTGAAGTTTTTCTTCGAGGGAGTACCTTGGCGCCGATTAGGTATTCatacaaagaaataaaaaccaTGACTAAAAGTTTTAGAGATAAGTTGGGCGAAGGAGGCTTTGGTGCTGTTTATAAAGGAAAGCTACGAAGCGGACCATTTGTGGCCATAAAAATGTTGAGTAAATCTAAGGGTAATGGACAAGATTTCATTAATGAAGTTGCAACTATAGGAAGAATACATCACACAAATGTGGTTCGACTTATTGGATTTTGTGTTGAGGGGTCTAAACGTGCTCTTGTTTATGAATTTATGCCCAATGGCTCCCTTGATAAGTATATTTCTTCTAGAGAGGATGCTCTCTCTCTTACTTATAAGCAAATGTATGAGATATCTCTTGGAGTGGCTCGTGGAATTGCTTATTTGCATCAAGGTTGTGAAATGCAAATCTTGCATTTTGATATCAAGCCCCATAACATTCTTCTCGATAAAAACTTTATCTCCAAAGTTTCAGACTTCGGTCTTGCAAAGCTTTATCCGAATGACATTAGCATTGTCACTCTGACTGCAGCCAGAGGAACAATTGGTTACATGGCTCCTGAATTGTTCTACCAAAATATTGGAGGAGTATCCTACAAGGCTGATGTATATAGCTTTGGAATGCTTTTGATGGAAATGGCAAGTAAGAGAAGAAATTTGAATCCACATGCAGATCGTTCAAGCCAACTTTTCTTTCCCTTTTGGATCTACAATCAATTGATTGAGGAAAAGGACGTAAAAATGGATGAACTTACTAATGAGGAAATGATTAATGTGAAAAAAATGTTCATAACTGCATTATGGTGCATACAATTAAAACCAAGTGATCGTCCTTCAATGAACAAAGTAATAGAGATGCTTGAAGGAAATATTGAGAACATTGAAATGCCTCCAAAACCTTCTCTATATCCAAATGAAACTTTTCAGAATGATCTTGAAGTAACCTCCGTCGAAATTGAGTCAGATACTGATGATGACTCTATTAGTATCTTGAAGGAAACTAACTCATAG 2220 0.3667 MVCMLCSISASVLRRGMESFLCFLQIMLITLILHHHQTCDAATNSNNNQTYCPTSSCGKITNIKYPFRLKNDPTACGDPRYELSCENNITTLTLFSGKYYLQEINYINYTIRVVDPGIEEGNCSSIPRYFLTTSNFTMLYTYEDYHMYPYQIDYQFGLGYGYIIYLNCSKPVEDDTEYVDTSPCIVNSDSKSYVYAFSGANYWEEDYSRSSKYLSVGRLKDYCQVKLVAMSSLDFPGVRDDVPNRPLSYEQIHGLLLYGFELSWISGACRDSCGDNQRCNFNGITADFECQSTDYCTYPLGIEVAKRCDQVSKRRILVEDVILGIVKGVVQIFGITKSSESTEAVLDSKTAIEIGRVTGRYLLPILVSRFVLGLLVFFVLLIYTYRKRHISMYENIEVFLRGSTLAPIRYSYKEIKTMTKSFRDKLGEGGFGAVYKGKLRSGPFVAIKMLSKSKGNGQDFINEVATIGRIHHTNVVRLIGFCVEGSKRALVYEFMPNGSLDKYISSREDALSLTYKQMYEISLGVARGIAYLHQGCEMQILHFDIKPHNILLDKNFISKVSDFGLAKLYPNDISIVTLTAARGTIGYMAPELFYQNIGGVSYKADVYSFGMLLMEMASKRRNLNPHADRSSQLFFPFWIYNQLIEEKDVKMDELTNEEMINVKKMFITALWCIQLKPSDRPSMNKVIEMLEGNIENIEMPPKPSLYPNETFQNDLEVTSVEIESDTDDDSISILKETNS 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00934 739 ProSiteProfiles Protein kinase domain profile. 420 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00934 739 Pfam Wall-associated receptor kinase galacturonan-binding 52 115 IPR025287 GO:0030247
Tsu01g00934 739 Gene3D Phosphorylase Kinase; domain 1 401 494 - -
Tsu01g00934 739 ProSitePatterns Serine/Threonine protein kinases active-site signature. 540 552 IPR008271 GO:0004672|GO:0006468
Tsu01g00934 739 ProSitePatterns Protein kinases ATP-binding region signature. 426 448 IPR017441 GO:0005524
Tsu01g00934 739 PANTHER RUST RESISTANCE KINASE LR10-RELATED 24 720 IPR045874 GO:0004672
Tsu01g00934 739 SMART serkin_6 420 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00934 739 Gene3D Transferase(Phosphotransferase) domain 1 495 700 - -
Tsu01g00934 739 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 24 720 - -
Tsu01g00934 739 Coils Coil 734 739 - -
Tsu01g00934 739 SUPERFAMILY Protein kinase-like (PK-like) 405 691 IPR011009 -
Tsu01g00934 739 Pfam Protein kinase domain 424 688 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00934 Tsu-Chr1 8562290 8565238 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00934 46 706 Receptor kinase-like Gene Family AT5G38260 35.163 2.31e-110 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g00934 PK_Tyr_Ser-Thr 7.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00934 - - mtr:MTR_1g027830 852.432