Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00933 ATGAGAACAAGGATGGAATCATTTCTATGCTTCCTTCAAATGATGTTTGTTGTATTAATACtgcatcattatcatcatcaagtATGTGATGCAATTACTACCAGTAAAAACCAAACATATTGTCCACCTTCTTCATGCGGCAAAATCACAAACATAAAACATCCGTTCCGACTTAAGAATGATCCAGCAACCTGTGGTGATCCGCGGTATGAGTTATCCTGcgaaaacaacaaaacaacattAACTCTGTTTTCGGGGAAATATAATGTGAAATCAATCAACTACAAAAACTATACAATTCGAGTAGTTGATCCCGGAATTGAAGACGGGGATTGCTCCTCAATTCCTCGGTATTTCTTAACTAAATCCAATTTCACAAGTTATTACAATTCTGACTACCACGGGGATCCGTACGAAGTCGGCCATCAATATTGGTTGGGGCACATAATTTACTTGAACTGTAGTAAACCAGTGAAGAACGATCCTATGTATGTGGAAACATCTCCCTGTGTCAAATGGAATTACAAAGGCCATGTTTATGCAATCGCGGGCGACATAAAGACTGGGAGCTTACATGTTGGTTGTCAGGTGAAGCTTGTTGCTATGTCATCAGCTTATGCTTTTAAGCCTAATTTTGTGAATGATGATATTGGACGAAATTATTCCTATATGGAAATTCATGAAATGCTAAGCTATGGATTCTACGTTTCGTGGATCAGACGTGGGTGTGAAGATTCTTGTGACGTTAACCAACAAAACTGCTACTTAAGTCAAAGAACTGGAGGTCTTGAATGTGAATATGATTATTGCAAAACTCCATTGGGACATGTCATGAGATGTGAACATTTGTCAAAGCTGCGCATATTAATGGAAGATATTATACTTGGCATTATAAAAgGACTACTACAAATAATTGGCACGAGTACAAAAGGTTCTCAATTAACCGGTGGAACTTTTGAACTATCTGACAAAGTTGCTGATTATAAAAGTGCAATTGAATTAGGAAAATTCAGTGGTAGATATCTCTTGCCTTCATTTATAGTGAGATTTACTTTGGGCCTTATAGTTTTCTTTGTACTACTGATATATACATGTCGAAGAAGACATATATCAATATATGACAATATTGAAGTTTTTCTTCGAGGGAGTACTTTGATACCAATAAGGTATTCATACAAAGATATTAAGAAGATGACTCAAAATATGAAGGACAAACTAGGTGAAGGAGGTTTTGGTTCTGTTTATAAAGGCAAGTTAAGCAGCGGACCATTTGTGGCCATAAAGATGTTGGGTAAATCTAAGGGTAATGGACAAGATTTTATTAGTGAAGTCGCAACCATAGGAAGAATACACCATGCTAATGTGGTGCGACTTATCGGTTTTTGTATTCAGAGATCGAAACGGGCTCTTGTGTATGAATTCATGCCCAATGGCTCTCTTGATAAGTATATTTCTACTAAAGAGGGTGCTATCTCATTAACTTCAAAGAAAATGTATGAGATATCTCTTGGAGTGGCTCGTGGAATTGCTTATCTGCATCAAGGTTGTGACATGCAAATCTTGCATTTTGATATCAAACCCCACAACATCCTTCTTGACGAGAACTTTATCCCCAAGGTTTCAGATTTTGGTCTTGCAAAACTCTATCCTAATGACAATAGTATTGTCACTTTAACTGCCGCACGTGGAACAATTGGTTACATGGCTCCTGAACTGATCTACAAAAATATTGGAGGAGTGTCCTACAAGGCCGATGTGTATAGTTTTGGAATGCTTTTGATGGAAATGGcaaacaagagaagaaatttaAATCCAAATGCAGATCGTTCAAGCCAACTTTTCTTTCCATTTTGGATTTATAATCAATTGATTGAAGAAAGAGAGATTGAAATGGATGAAATTAGTGATGAGGAAAAAAATATGGTAAAGAAAATGTTCATAATTGCGTTATGGTGTATACAATTAAAACCAAGTGACCGTCCTGCAATGAACAAAGTAATAGAGATGCTTGAAGGAAATATCGAAGATATTGAAATGCCTCCAAAGCCTTCTttttgtccaaatgaaatgattCAAGAAGTCCTAGAAGTCAACTCTAATGATATTCAATCAGAAACTGATACAGAAACTGATACTGATTCTGTTAGTACTATTGAGGAAGATACAACAGAGCCTTTATTGATGAACTCTGCCTAG 2196 0.3538 MRTRMESFLCFLQMMFVVLILHHYHHQVCDAITTSKNQTYCPPSSCGKITNIKHPFRLKNDPATCGDPRYELSCENNKTTLTLFSGKYNVKSINYKNYTIRVVDPGIEDGDCSSIPRYFLTKSNFTSYYNSDYHGDPYEVGHQYWLGHIIYLNCSKPVKNDPMYVETSPCVKWNYKGHVYAIAGDIKTGSLHVGCQVKLVAMSSAYAFKPNFVNDDIGRNYSYMEIHEMLSYGFYVSWIRRGCEDSCDVNQQNCYLSQRTGGLECEYDYCKTPLGHVMRCEHLSKLRILMEDIILGIIKGLLQIIGTSTKGSQLTGGTFELSDKVADYKSAIELGKFSGRYLLPSFIVRFTLGLIVFFVLLIYTCRRRHISIYDNIEVFLRGSTLIPIRYSYKDIKKMTQNMKDKLGEGGFGSVYKGKLSSGPFVAIKMLGKSKGNGQDFISEVATIGRIHHANVVRLIGFCIQRSKRALVYEFMPNGSLDKYISTKEGAISLTSKKMYEISLGVARGIAYLHQGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPNDNSIVTLTAARGTIGYMAPELIYKNIGGVSYKADVYSFGMLLMEMANKRRNLNPNADRSSQLFFPFWIYNQLIEEREIEMDEISDEEKNMVKKMFIIALWCIQLKPSDRPAMNKVIEMLEGNIEDIEMPPKPSFCPNEMIQEVLEVNSNDIQSETDTETDTDSVSTIEEDTTEPLLMNSA 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00933 731 Coils Coil 620 640 - -
Tsu01g00933 731 Pfam Protein kinase domain 403 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00933 731 Gene3D Transferase(Phosphotransferase) domain 1 475 680 - -
Tsu01g00933 731 ProSiteProfiles Protein kinase domain profile. 400 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00933 731 Pfam Wall-associated receptor kinase galacturonan-binding 41 104 IPR025287 GO:0030247
Tsu01g00933 731 PANTHER RUST RESISTANCE KINASE LR10-RELATED 15 700 IPR045874 GO:0004672
Tsu01g00933 731 SMART serkin_6 400 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00933 731 SUPERFAMILY Protein kinase-like (PK-like) 386 671 IPR011009 -
Tsu01g00933 731 ProSitePatterns Serine/Threonine protein kinases active-site signature. 520 532 IPR008271 GO:0004672|GO:0006468
Tsu01g00933 731 Gene3D Phosphorylase Kinase; domain 1 383 474 - -
Tsu01g00933 731 MobiDBLite consensus disorder prediction 699 731 - -
Tsu01g00933 731 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 15 700 - -
Tsu01g00933 731 ProSitePatterns Protein kinases ATP-binding region signature. 406 428 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00933 Tsu-Chr1 8555051 8561756 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00933 389 704 Receptor kinase-like Gene Family AT5G38280 50.464 8.67e-106 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g00933 Pkinase 7.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00933 - - mtr:MTR_1g027830 953.74