Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00931 ATGGAATCATTGTTATGCTTCCTCCAAATTGTTTTGGTTGTTTTGATACTACTGTATCATAATCATCAAACATGTGATGCAACAATTACTAATAACCAAACTTATTGTCCAACTTCTTCATGCGGCAAAATCACAACCATAAAACATCCGTTTCGACTTAAGGATGATCCAACATCATGTGGTGATCCGAGGTACGAGTTATCCTGCGAAAACAACATGACAATGTTAACTCTATTTTCGGGTAAATACCATGTGAAGTCAATTGACTACAAAATCTACACAATTCGGTTAGTTGATCCCGGAATTCAAGAGGGTAATTGCTCCTCCGTTCCTCGGTATTTCTTAACCGCATCCAATTTCACAAGTTCTTACAATTTTAGCTACCGCGGGGATCCATACGAAGTCTTTCCAGAATCTCCGCTCGGGTACATAATATACTTGAACTGTAGCAAGCCAGTGAAGAACGATCCTATGTATGTCGATACATCTCCTTGCGTAAAATGGAATTCCAAAGGCTATGTTTATGCTATCGCTAACGATTTCAACGCCGGGAGATTAAATGTTGGTTGTCATGTGAAACTTGTCGCTACGTCTTCCGATTCTTCTTTGGTTACGAATTTTTTCAACAACACTTCACAAAAATTTTCCTACTCTGAAATTCATGGAATTCTAAGCAAAGGATTTGATCTTACTTGGGTGAGACGTGCTTGTGAAGATTTTTGTGACACTAACCTACAGAACTGTCAGTTCAATGGAGAAATTGGAGGGCTTGAATGTGAACTTGATTATTGCAGGACTACATTAGGAAATTTCGTCAATTGTGATATAATACTCGGCATCGTTAAAGGATTGCTACAACTAAAGGGTACGACAATAAGTTCTGAATTAACTCGGGCAACCTATGGATTACCTAAGAAAATGTCTGATTCTAAAGTTGGTATCGAATTAGGAAGAGTCGCAGGAAAATATCTCTTGCCACCATTTATAGTGCGATTTACATTGGGCCTCATTGTTTTCTTTGCGCTATTGGTATATACATGTCGAAGAAGACATATCTCAATTTACGAAAATATTGAAGTTTTTCTTCGTGGGAGTACTTTGATGCCAATAAGGTATTCATACAAAGATATAAAGAAGATGACAAGAAGTTTCAAGGACAAGGTGGGTGAAGGAGGTTTTGGTTCTGTTTATAAAGGAAAGTTAAGCAGTGGGTCATTTGTTGCCATAAAGATGTTGGGTAAACCTAAGGGTAACGGACAAGATTTTATTAGTGAAGTCGCAACTATAGGAACCATACATCATGCCAATGTGGTAAAACTTATTGGATTTTGTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTAAGCAGTGGACCATTTGTGGCTGTAAAGATGTTGGGTAAACCTAAGGGTAACGGACAAGATTTTATTAGTGAAGTCGCAACCATAGGAAGGATACATCATGCCAATGTGGTGAGACTTATTGGATTTTGTTTTGAGAGATCAAAACGTGCTCTTGTTTATGAATTCATGCCGAACGGATCTTTAGATAAATATATTTCCTCTAAAGAGGATGCTATCTTCCTAACTTCTAAGAAAATGTATGAGATATCTCTTGGAGTGGCTCGTGGAATTGCTTATTTGCATCAAGGTTGTGATATGCAAATATTGCATTTTGATATCAAACCCCATAACATACTTCTTGATGACAACTTTATCCCGAAAGTTTCAGACTTCGGTCTTGCAAAACTTTATCCTAATGACAATAGTATTGTCACTTTAACTGCCGCACGAGGAACAATTGGTTACATGGCTCCTGAACTGTTCTACAAAAATATTGGAGGAGTGTCCTACAAGGCTGATGTGTATAGCTTTGGAATGCTTTTGATGGAAATGGcaaacaagagaagaaatttaAATCCAAATGCAGATCGTTCAAGCCaacttttctttcctttttggaTTTATAATCAATTGATTGAAGAAAGAGAGATAGAAATGGATGAAATCACTGacgatgaaaaaaataatgtgaaaAAAATGTTCATAATTGCGTTATGGTGTATACAATTAAAACCAAGCGATCGTCCTGCGATGAACAAAGTAATAGAGATGCTTGAAGGAAATATTGAAGATATTGAAATGCCTCCAAAACCTTCTTTCTATCCAAATGAAATTATTGAGGATATTGAATCAGAAACTGATACTGACTCTGACTCTATAAGTTTTATTGTGGAAGATACATCAAAGCCTCTATTGATGAATTCTGCTTGA 2364 0.3418 MESLLCFLQIVLVVLILLYHNHQTCDATITNNQTYCPTSSCGKITTIKHPFRLKDDPTSCGDPRYELSCENNMTMLTLFSGKYHVKSIDYKIYTIRLVDPGIQEGNCSSVPRYFLTASNFTSSYNFSYRGDPYEVFPESPLGYIIYLNCSKPVKNDPMYVDTSPCVKWNSKGYVYAIANDFNAGRLNVGCHVKLVATSSDSSLVTNFFNNTSQKFSYSEIHGILSKGFDLTWVRRACEDFCDTNLQNCQFNGEIGGLECELDYCRTTLGNFVNCDIILGIVKGLLQLKGTTISSELTRATYGLPKKMSDSKVGIELGRVAGKYLLPPFIVRFTLGLIVFFALLVYTCRRRHISIYENIEVFLRGSTLMPIRYSYKDIKKMTRSFKDKVGEGGFGSVYKGKLSSGSFVAIKMLGKPKGNGQDFISEVATIGTIHHANVVKLIGFCFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSSGPFVAVKMLGKPKGNGQDFISEVATIGRIHHANVVRLIGFCFERSKRALVYEFMPNGSLDKYISSKEDAIFLTSKKMYEISLGVARGIAYLHQGCDMQILHFDIKPHNILLDDNFIPKVSDFGLAKLYPNDNSIVTLTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEMANKRRNLNPNADRSSQLFFPFWIYNQLIEEREIEMDEITDDEKNNVKKMFIIALWCIQLKPSDRPAMNKVIEMLEGNIEDIEMPPKPSFYPNEIIEDIESETDTDSDSISFIVEDTSKPLLMNSA 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00931 787 Gene3D Phosphorylase Kinase; domain 1 363 450 - -
Tsu01g00931 787 Pfam Wall-associated receptor kinase galacturonan-binding 36 99 IPR025287 GO:0030247
Tsu01g00931 787 Gene3D Transferase(Phosphotransferase) domain 1 542 746 - -
Tsu01g00931 787 ProSitePatterns Protein kinases ATP-binding region signature. 388 410 IPR017441 GO:0005524
Tsu01g00931 787 ProSitePatterns Serine/Threonine protein kinases active-site signature. 586 598 IPR008271 GO:0004672|GO:0006468
Tsu01g00931 787 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 10 445 - -
Tsu01g00931 787 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 485 764 - -
Tsu01g00931 787 SMART serkin_6 382 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00931 787 Pfam Protein kinase domain 487 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00931 787 SUPERFAMILY Protein kinase-like (PK-like) 367 447 IPR011009 -
Tsu01g00931 787 SUPERFAMILY Protein kinase-like (PK-like) 487 737 IPR011009 -
Tsu01g00931 787 Gene3D Phosphorylase Kinase; domain 1 482 541 - -
Tsu01g00931 787 Pfam Protein tyrosine and serine/threonine kinase 384 445 IPR001245 GO:0004672|GO:0006468
Tsu01g00931 787 PANTHER RUST RESISTANCE KINASE LR10-RELATED 10 445 IPR045874 GO:0004672
Tsu01g00931 787 PANTHER RUST RESISTANCE KINASE LR10-RELATED 485 764 IPR045874 GO:0004672
Tsu01g00931 787 ProSiteProfiles Protein kinase domain profile. 382 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00931 Tsu-Chr1 8547412 8552354 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00931 487 768 Receptor kinase-like Gene Family AT5G38280 49.653 9.50e-92 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g00931 Pkinase 1.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00931 - - mtr:MTR_1g027830 507.679