Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00930 atggCCAATTTTCACAACTTCCCCTTTCTACTATCTCTATTCTTTCTCCTATTAACAAAACCagtaacatccaaaaatcaTTGCACTGAAAAATGTGGAAATGTTCAAATTCAATTTCCATTTCATctaaaaaacaacaacataaatcaAACCAATCCTAAAGGTTTTGAATTATCATGTACAGATAAAGATGAAACTGTTCTAGAATTTCCCAAACTTTCACTCAGACTTTTCATCAAACAGATAGACTACAAATCACAAAAGTTCCAAATTTATGATCCAAAGAATTGTCTTGCAAGTCAATTATTAAAACTAGGAAATTCATCAGTTTCACCTTTTCTGTTACACTTCCATGAGTATAATATCCAGTGTAACGTTTCGTTCTTTCGTTGCAATTCGAATAATGGGTGTTCGATATTGCAACGTGATTCTGATGGTGATTTTATTGATCCTGAATTGGTTTCTTGTAGAAAAGTGAGTGAGGTTTTGAATGTTGGTTGGATGGTTGAAGAATGGGAAGATGATGTTACTGACAGTTTGATTATGGAATGGTCTAAACCtaattgtagtttttgtgaAGTTCAAGGGAAAAAATGTAAATGGAAGAATAGTGGTAGAAATGGTGAAGTTGaatgttttgtttgtaaatCAAATGGGATTGCAAGATCCACTGTTCTTCTCATTACTGCTGGGGTTATAGTTGGATCAATGGTTTTGTTGCTATTGGCAAATGGACTACTTCAAATTTATCGCTATTTTAAGATGAAAGGGGATGACATAGCAAGGATAGAGAAGTTCTTAGAGGATTATAGGGCAATGAAACCTACAAGATTCACTTATGCTGATATTAAGAGAATCACAAATGGTTTTAAGGAGAGTTTAGGAGAAGGAGCACATGGAGCAGTCTTCAAAGGTATGCTCTCCCAAGAAATTTTAGTAGCTGTGAAGGTACTCAATGAAACACAAGGAGATGGAAACGATTTCATTAACGAAGTCGGAACCATGGGAAAAATTCATCATGTCAATGTCGTTCGTTTGCTCGGATTCTGCGCTGACGGATTCCACCGTGCTCTTGTCTATGATTTCTTTCCAAATGGGTCATTGCAGAATTTCTTGGCACCACCAGAGAACAAGGATGTTTTTCTCGGTTGGGAAAAGTTGCAACAAATTGCTCTTGGTGTTGCTAGAGGGATTGAGTATCTTCATGTTGGTTGTGATCATAGAATACTTCACTTTGATATTAATCCACACAATGTGTTAATAGATGATAATTTGAGTCCTAAAATTACTGACTTCGGACTAGCTAAATTGTGTCCGAAAAATCAAAGCACGGTTTCTATGACTGCAGCTAGGGGAACATTGGGATACATTGCACCAGAAGTTTTCTCGAGAAACTTTGGAAATGTGTCTTATAAGTCCGATATTTATAGCTATGGAATGTTGTTGCTCGAGATGGTTGGAGGAAGAAAGAATACTGATGTGTCAGCTGAGGAAACATTCCAAGTTTTGTATCCGGAATGGATTCATAATCTGATTGAAGGTAAAGACATACAAGTTACTATTGAGGAAGAGGGAGATGTTAGAATTGCAAAAAAGCTTGCCCTTGTCGGACTTTGGTGTATTCAGTGGAATCCAGTAGACCGTCCGTCAATGAAAACTGTGGTTCAAATGCTTGAAGGTGAGGGAGAAAAATTAGTGGCACCCCCTACCCCTTTTGACTCTATTGGTGCTAATGGAACAAATGCAGTAGTTCCAACTAGACATCTCAATTTTGAGTTAGAAGTTATTCCTGAAATTGAGTAA 1803 0.3572 MANFHNFPFLLSLFFLLLTKPVTSKNHCTEKCGNVQIQFPFHLKNNNINQTNPKGFELSCTDKDETVLEFPKLSLRLFIKQIDYKSQKFQIYDPKNCLASQLLKLGNSSVSPFLLHFHEYNIQCNVSFFRCNSNNGCSILQRDSDGDFIDPELVSCRKVSEVLNVGWMVEEWEDDVTDSLIMEWSKPNCSFCEVQGKKCKWKNSGRNGEVECFVCKSNGIARSTVLLITAGVIVGSMVLLLLANGLLQIYRYFKMKGDDIARIEKFLEDYRAMKPTRFTYADIKRITNGFKESLGEGAHGAVFKGMLSQEILVAVKVLNETQGDGNDFINEVGTMGKIHHVNVVRLLGFCADGFHRALVYDFFPNGSLQNFLAPPENKDVFLGWEKLQQIALGVARGIEYLHVGCDHRILHFDINPHNVLIDDNLSPKITDFGLAKLCPKNQSTVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTDVSAEETFQVLYPEWIHNLIEGKDIQVTIEEEGDVRIAKKLALVGLWCIQWNPVDRPSMKTVVQMLEGEGEKLVAPPTPFDSIGANGTNAVVPTRHLNFELEVIPEIE 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00930 600 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 43 600 - -
Tsu01g00930 600 SUPERFAMILY Protein kinase-like (PK-like) 270 559 IPR011009 -
Tsu01g00930 600 Gene3D Transferase(Phosphotransferase) domain 1 363 566 - -
Tsu01g00930 600 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524
Tsu01g00930 600 Pfam Wall-associated receptor kinase galacturonan-binding 28 93 IPR025287 GO:0030247
Tsu01g00930 600 Gene3D Phosphorylase Kinase; domain 1 263 362 - -
Tsu01g00930 600 ProSiteProfiles Protein kinase domain profile. 288 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00930 600 PANTHER RUST RESISTANCE KINASE LR10-RELATED 43 600 IPR045874 GO:0004672
Tsu01g00930 600 Pfam Protein kinase domain 291 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00930 Tsu-Chr1 8524879 8545365 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00930 185 571 Receptor kinase-like Gene Family AT1G66910 44.862 2.52e-106 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g00930 Pkinase 3.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00930 - - gmx:100819302 883.248