Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00929 ATGAAAAAACAAGCTCAATTTTCTTGttcatcatattcatatttACAATCACTAGTATCAATATTTGCTACAATTCTTCTCCTTTTCCATCAAAATTCTCTAGCTAAGCATCACCAACCATGTCCAACTTCATCATGTGGCAAAATTCACAACATAACATATCCATTTcgtctcaaaaccgatccaaaccacTGTGGCGACTCAAGGTACGAATTAGATTGCAACGAATATGGTGCATCATTAACTATGTTCTCGAGGAAATACTACGTACAACACATTGATTACAAGAgatataaaatttcattaaGCGACGCGGGTGCAGTTGAAGATATTAATTGCTCTTTCATCCCACGGTACTTTCTATATGACCGTAGTTTCCATAATATTCTTTATGGCGAAGAGGATCATTTTGGATCTGAGCCATTCCTTTTGGATCCACCAAATCCAACGAGGATCGCGTATTTCAATTGTTCTAGTCCAGTTAAAGATCCACGGTATGTTACCGTGGACACAAGTCATTGTAGCATACGAGGAAATAGTCATGTGTATGCTGTTATGGAACCATCATTGTACGAGTATCGTGTTAAGGATATTAAGGTCGGGTGTGATTTTATGGTGGCTACATTGGCTAAGGCAGGGCCGGAGACCAGGAAAGGGAAGGTTTCGTATAATGAGATTCATCGGCTGATTGTTGATGGAGTTGAAGTTTCTTGGTTGCCTGCAGTTTGTGAAAGTAGATGTGGAAAAGGGACAAGTTGTAAGGTTGTTGATGAAAAAAGTGGTGAAGTTCAATGTAATAAGCAATTATGTCATTATGCTTACCAAACAACTGATAAGTGTGGACTTGGAAGTAGAATCACATTTAGCACAAGACAATTGGACAATCCAGTTGGACTAGAATATTTTGATGGAGGAATATTCATAGGAAGAAAAGTTATACCAATATTCATAGCAGCTAGATTTCTATTTGGAGTTATAGTTCTACTTGTGATATTTATCTATAAATGGAGAAGAAGACATGTATCAATGTATGATAACATTGAAAACTTTTTGCTAGAGAGCAATCTAAATCCTATTAGGTATGAGTACAAAGAAATCAAGAAGATGACCGGAGGTTTCAGAGTGAAATTAGGTCAAGGTGGTTTCGGTGCGGTGTACAAAGGAAAGCTAAGAAGTGGTCCGGATGTTGCAATAAAGATGTTGACAAAAACAAATGTTAATAATGGACAAGATTTTATTAATGAAGTTGCGACCATTGGAAGAATACATCATGTTAATGTAGTTCGTTTGGTTGGATATTGTGTTGAAGGAAAAAAGAGTGCGTTGGTTTATGAATTCATGCCGAATGGATCGTTGGATAAATACATTTTTCCTAAAGAAGGAGTTGTCCCTTTGAGTTATGAGAAAATTTATGAAATAGCTCTTGGAATTGCTCGAGGGATTGCGTATCTACATCAAGGTTGTGATATGCAAATTCTACATTTTGATATCAAGCCTCATAATATTCTTCTAGATGAAGATTTTGTTCCAAAGGTTTCGGATTTTGGACTTGCAAAGCTTTATCCTGTGAACGATAGCATTGTTCCATTAACTGCGGCCAGAGGAACTTTGGGTTACATGGCTCCTGAATTGTTCTACAAAAATATTGGTGGAGTGTCTTACAAGGCTGATGTATATAGCTTCGGAATGCTTTTGATGGAAATGGCAGGTAAAAGGAAGAACATGAATCCTAACGCAGAGCATTCGAGTCAACATTACTTCCCATTTTGGATTTATGATCAATttaaagaagagaaagataTTGATATTATGGAAGATGTCTCAGAAGAGGGAATGACTATAGCTAAAAAGATGTTCATGGTTGCACTTTGGTGTATTCAGTTGAAACCGAGTGGTCGTCCTTCAATGAACAAAGTAGTAGGGATGCTTGAAGGGAAAACGGAAAGCCTTGAACTACCTCCAAGGCCTTCTTTTTATCCAAATGAAAACTATAAACATCGTGAAGAAATCGACTCTGATCAATCATCATGGGGTGATTCCACTAGTATTGTTGAAGCCTCGACTAATTATTCATTGGATAGTTCCTCTTGA 2091 0.3611 MKKQAQFSCSSYSYLQSLVSIFATILLLFHQNSLAKHHQPCPTSSCGKIHNITYPFRLKTDPNHCGDSRYELDCNEYGASLTMFSRKYYVQHIDYKRYKISLSDAGAVEDINCSFIPRYFLYDRSFHNILYGEEDHFGSEPFLLDPPNPTRIAYFNCSSPVKDPRYVTVDTSHCSIRGNSHVYAVMEPSLYEYRVKDIKVGCDFMVATLAKAGPETRKGKVSYNEIHRLIVDGVEVSWLPAVCESRCGKGTSCKVVDEKSGEVQCNKQLCHYAYQTTDKCGLGSRITFSTRQLDNPVGLEYFDGGIFIGRKVIPIFIAARFLFGVIVLLVIFIYKWRRRHVSMYDNIENFLLESNLNPIRYEYKEIKKMTGGFRVKLGQGGFGAVYKGKLRSGPDVAIKMLTKTNVNNGQDFINEVATIGRIHHVNVVRLVGYCVEGKKSALVYEFMPNGSLDKYIFPKEGVVPLSYEKIYEIALGIARGIAYLHQGCDMQILHFDIKPHNILLDEDFVPKVSDFGLAKLYPVNDSIVPLTAARGTLGYMAPELFYKNIGGVSYKADVYSFGMLLMEMAGKRKNMNPNAEHSSQHYFPFWIYDQFKEEKDIDIMEDVSEEGMTIAKKMFMVALWCIQLKPSGRPSMNKVVGMLEGKTESLELPPRPSFYPNENYKHREEIDSDQSSWGDSTSIVEASTNYSLDSSS 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00929 696 Pfam Wall-associated receptor kinase galacturonan-binding 41 104 IPR025287 GO:0030247
Tsu01g00929 696 Gene3D Phosphorylase Kinase; domain 1 348 446 - -
Tsu01g00929 696 Gene3D Transferase(Phosphotransferase) domain 1 447 652 - -
Tsu01g00929 696 ProSitePatterns Protein kinases ATP-binding region signature. 377 399 IPR017441 GO:0005524
Tsu01g00929 696 SMART serkin_6 371 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00929 696 SUPERFAMILY Protein kinase-like (PK-like) 361 673 IPR011009 -
Tsu01g00929 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 492 504 IPR008271 GO:0004672|GO:0006468
Tsu01g00929 696 Pfam Protein kinase domain 376 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00929 696 ProSiteProfiles Protein kinase domain profile. 371 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00929 696 CDD STKc_IRAK 377 645 - -
Tsu01g00929 696 MobiDBLite consensus disorder prediction 651 681 - -
Tsu01g00929 696 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 676 IPR045874 GO:0004672
Tsu01g00929 696 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 1 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00929 Tsu-Chr1 8521234 8523994 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00929 11 659 Receptor kinase-like Gene Family AT5G38260 35.053 5.61e-106 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g00929 Pkinase 5.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00929 - - lja:Lj0g3v0275229.4 976.467