Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00928 ATGATTCATTCAAATCAACATGAGAGCCCCAATACATTGCATTGCAAAAACCTATGTTGTATATTGGAAAGAGtTGGAGATAATGAACCCCTTTCTTCAGCTCTACCTGGCTGCAAAAACATATGTGGAGATGTTGAAATTCCTTATCCATTTGGTATAGCTAATTCATCAATACCAAATCAAGGACCTTGTTATTTGGAGGAGCCTATGTTTAAGGTCACATGTATAAACAACTCCAAATTATATTTTGGTACTAATAGTGAGAACACAAATAGGTCTATACAAGTTTTAAACATAGACGTCGTACAAGGTCAAATCGAGTTGTTGTTTTACGTTGGAAGATATTGTGGTCATCGAAAGTACAATCGGCCCTGGCTTAGATGGCCGTCGCTTGGTTTTATCATTTCAAGCAAGGAAAATAATTTCCTAACCGTTGGATGCGATAGCTATGGATATCTCAATAGCTCTTACGATGGGGACACATACTCAACTGGATGCATAACAAGGTGTAATGGAAATAAGAGGAAGATTGAAAATGGAACGTGTTCCGGTATTGGTTGTTGTCAAGTGGATATTCCAACGGACATGAGGAATATAAGTATCGAAGCATATTATTTCGCTAATTCAACGATAAACTTAGGATGCAGTGTTTCTTTTATTGTCAAACATGGATTCTACAATTTTTCTACCATTGATCTACATGATTTCCGTTATGATAAGGTCCCTTTAATTCTTGATTGGAGCGTAGGGAGCACGAAATGTAATGCTACCAAGAGTGGAGTCAATTATGCTTGTAGGAACAATAGCGTTTGTGACGATGAGGACATTGGTTATGGCTACAGATGCAAATGCAAGAAAGGTTATGAAGGAAACCCATATCATCCGGATGGATGCAAAGACATCGATGACTGTAAGACATCAAATCATACATGCTTAGATGAAAATCATTGTCGCAATACCGATGGGTCTTATGAATGTTTTTGTCCTGAGGGTCAAATTGGAAAAGGAACAAAAGAAGGAGAGTGTCGTGGACGAAGTGTACTTGCAAAGGTCTCTATCGGAGCAAGTGCAGGTTTTATTATTCTATTTGTGGGGAGTTCAGCATTGTACTTGATATATCAGAGAAGAAAACTCAAAAACTTAAAAGAGAAATTCTTTCAACAAAATGGtggttttattttgttaagtgAACTCTCTAAAAGAGAAGACACATCAAGAACTGCTCAAATATTCAAAGAAGAGGAACTTAAGAAGGCGACCAAAAACTACGACGAAAACTTAATCATCGGTAGAGGAGGTTTTGGTACAGTCTTCAAAGGAATTTTACCCGACAACAGAATTGTTGCTGTCAAAAAGTCCAAAATAATAGACGAAAATCAAATTGAGCAATTCATAAATGAGGTAGTCGTTATGTCCCAAATAAATCATAGGAATGTTGTCAAACTCTTAGGATGTTGTTTGGAGACACAAGTTCCTTTACTAGTTTATGAATTTGTTAGCAATGGTACCCTTTTCGATTTCATGCACAATATAGATAATGCTAATAATGTAACATGGAAAACATGTTTAAGGATAGCATCAGAGACAGCCGGAGCTTTATCGTATCTACATTCAGCTGCATCAATACCTATTATCCATAGAGATGTAAAAAGTACCAACATTCTCTTAGATGACAATTACACTGCAAAAGTGTCCGATTTCGGAGCTTCAAGATTGGTTCCACTTGATCATACTAAGATTGCCACAGTGGTACAAGGAACTCTTGGATATTTAGATCCAGAGTATATGCAAACACATCAATTAACCGATAAAAGTGATGTTTATAGTTTTGGCGTAGTTCTTGCAGAGCTATTAACAGGAGAGAAACCTATCTCCATTTTTAGGCCTGAAGAGAAAAGAAACCTTTCTATTCACTTCTTATCTTGTTTAAGAGAGAATCGCGTGTTTGAAGTTCTTCGAGTTGGTATCTTGAGTGATGATAACAAGGAGGAGATCAAGGAGGTTTCTATTCTTGCAGCAAAGTGCTTGAGACTTAAAGGAGAGGAAAGACCTAGCATGAAGGAAGTGGCTATGGAGTTGGAAGGTATGAGATTTGGGGAAAAACACCCTTGGACTAAATCAGATATAAATCTGGAGGAAACTCAATCCTTACTTCAAGAAACATCATTCAACACTAATTATGAAACTGGTGATAGCAGCAATCATGGATATAGTGGGTATGATAGCTTGAAAGTTCATGCACCAATGTCCTTGAATGATGGAAGATGA 2268 0.369 MIHSNQHESPNTLHCKNLCCILERVGDNEPLSSALPGCKNICGDVEIPYPFGIANSSIPNQGPCYLEEPMFKVTCINNSKLYFGTNSENTNRSIQVLNIDVVQGQIELLFYVGRYCGHRKYNRPWLRWPSLGFIISSKENNFLTVGCDSYGYLNSSYDGDTYSTGCITRCNGNKRKIENGTCSGIGCCQVDIPTDMRNISIEAYYFANSTINLGCSVSFIVKHGFYNFSTIDLHDFRYDKVPLILDWSVGSTKCNATKSGVNYACRNNSVCDDEDIGYGYRCKCKKGYEGNPYHPDGCKDIDDCKTSNHTCLDENHCRNTDGSYECFCPEGQIGKGTKEGECRGRSVLAKVSIGASAGFIILFVGSSALYLIYQRRKLKNLKEKFFQQNGGFILLSELSKREDTSRTAQIFKEEELKKATKNYDENLIIGRGGFGTVFKGILPDNRIVAVKKSKIIDENQIEQFINEVVVMSQINHRNVVKLLGCCLETQVPLLVYEFVSNGTLFDFMHNIDNANNVTWKTCLRIASETAGALSYLHSAASIPIIHRDVKSTNILLDDNYTAKVSDFGASRLVPLDHTKIATVVQGTLGYLDPEYMQTHQLTDKSDVYSFGVVLAELLTGEKPISIFRPEEKRNLSIHFLSCLRENRVFEVLRVGILSDDNKEEIKEVSILAAKCLRLKGEERPSMKEVAMELEGMRFGEKHPWTKSDINLEETQSLLQETSFNTNYETGDSSNHGYSGYDSLKVHAPMSLNDGR 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00928 755 SUPERFAMILY Protein kinase-like (PK-like) 405 694 IPR011009 -
Tsu01g00928 755 SUPERFAMILY EGF/Laminin 298 334 - -
Tsu01g00928 755 Pfam Wall-associated kinase 180 285 IPR013695 GO:0004674|GO:0016021
Tsu01g00928 755 Pfam Calcium-binding EGF domain 300 342 IPR001881 GO:0005509
Tsu01g00928 755 Pfam Protein kinase domain 425 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00928 755 ProSitePatterns Serine/Threonine protein kinases active-site signature. 544 556 IPR008271 GO:0004672|GO:0006468
Tsu01g00928 755 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 317 328 IPR000152 -
Tsu01g00928 755 Gene3D Phosphorylase Kinase; domain 1 393 498 - -
Tsu01g00928 755 ProSiteProfiles Protein kinase domain profile. 423 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00928 755 Pfam Wall-associated receptor kinase galacturonan-binding 38 107 IPR025287 GO:0030247
Tsu01g00928 755 SMART egfca_6 300 343 IPR001881 GO:0005509
Tsu01g00928 755 Gene3D Transferase(Phosphotransferase) domain 1 499 716 - -
Tsu01g00928 755 Gene3D Laminin 251 342 - -
Tsu01g00928 755 CDD STKc_IRAK 429 696 - -
Tsu01g00928 755 SMART egf_5 303 343 IPR000742 -
Tsu01g00928 755 SMART egf_5 253 299 IPR000742 -
Tsu01g00928 755 ProSitePatterns Protein kinases ATP-binding region signature. 429 452 IPR017441 GO:0005524
Tsu01g00928 755 ProSiteProfiles EGF-like domain profile. 300 338 IPR000742 -
Tsu01g00928 755 SMART serkin_6 423 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00928 755 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 25 724 - -
Tsu01g00928 755 ProSitePatterns Calcium-binding EGF-like domain signature. 300 326 IPR018097 GO:0005509
Tsu01g00928 755 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 25 724 IPR045274 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00928 Tsu-Chr1 8515602 8518800 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00928 38 755 Receptor kinase-like Gene Family AT1G21230 44.730 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Tsu01g00928 Pkinase 4.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00928 - - gmx:106795446 937.562
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00928 01 8515602 8518800 Tsu08g02892 08 44164787 44167845 PCT