Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00927 atGAAACAGAACACAAAGCTCACACAATTATGCACAATTTTAATCATTACAATATCCATGGTAACAATAGTATTTGCATCGGATGAATCCTTTTCTACATCGCTACCCGGTTGCAAAAACACATGTGGAGGTGTCAAAGTTCCATATCCATTTGGTATATCAAATTCATCAATACCAAATCAAGGACCTTGTTTCCTAGAGTCCAAAGAGTCCAAATTTAATCTCACATGTGAAAATGACACAAAATTATTCTTGTGGAATTTACAAGTTTTGAACATAAGCTTCCTTGAAGAACAAATTGAGATTTCATTTTACGTCTCTGAATATTGTGATAGCAATAATTACAACGATCCCTATGTAAACATTGCTGACGGGTTCATCATATCGCCCAAAGAAAACAAGTTCTTAACAGTTGGTTGTGATAATTACGGTTATCTAAACAGCGTTTacaacaaagaaatatattcgaCCGGTTGCTTAACAAGATGTAATGGTAATCGAAAAAGAATTGAAAATGGAACATGTTCCGGTATTGGTTGTTGTCAAGTTGATATTCCAACTATGATGAGGAATATAACTATACAAGCTTTTCGTTTTGATAATTCCACGGAAAGTGTGGGGTGTGGAAATTCATTCGTTGTTAAAAATggatattataatttttcagtTTCTCATTTGGATGATTTTCCTTATGAGGAGCTTCCATTGATTATTGATTGGAGTGTTGGAAATAAAAGTTGCAAGGCTTCAAAAGGTGAAGATGATTATGTTTGCAAGAAGAATAGTGATTGCTTTGATGAGGGTATTGATTTTGGTTATCAATGTAAATGTAAGAAAGGTTATGAAGGAAACCCTTATCATCCAGATGGCTGCAAAGACATCGACGAATGTAAGACATCAAATAACACATGCATAAGTGCAAAACATTGTCGCAACACTGAAGGGAGTTACGAATGCTTTTGTCCGGATGGACAATCTggaaatggaacattggcagGAGGGTGTAATAGACGAGATCTTATTACCAAGATTGCAATCGGAACAAGTGCTGGACTCATTGTCCTATTTGTGGCGATTTCATCCCTATACTTGACATTCCAAAAAAGGAAACTCATCAAACTAAAGCAAAAGTTCTTTCAACAAAATGGTGGTTCCATTTTGATACAACAGTTATCTACAAGAGAAGACACATCACAGTCTGCTCAAATATTCACGGAAGAGGAACTTAAGAAAGCCACCAAAAACTACGATGAGAGCTTAATCATTGGTAGAGGAGGTTTTGGTACAGTCTTCAAAGGAATTTTGCCTGACAACAAAATCATCGCtgtaaaaaaatccaaaataatagaCGCAGATCAAATCGAGCAATTCATTAACGAAGTAGTGGTTTTGTCCCAAATAAATCATAGGAATGTCGTCAAACTCTTAGGATGTTGTTTAGAGACAGAAGTTCCATCCTTAGTTTATGAATTTGTTAGCAATGGTACACTTTTCGACTTCATACAAAATACCAAAGATCAAGCAAATAATCCAACATGGAAAACACGTTTAAGGATAGCAGCGGAGACAGCCGGAGCTTTATCATATCTACATTCGGCTGCTTCAGTCCCAATTATTCATAGAGATGTTAAGAGTACCAACATTCTTTTGGATGACAACTACACTGCAAAAGTTTCCGATTTCGGAGCTTCAAGATTGGTTCCACTTGATCAAACCGAGATAGCAACAATGGTGCAAGGAACACTTGGATACTTAGATCCAGAGTATATGCAAACACATCAATTAACTGAGAAAAGTGATGTTTATAGCTTTGGCGTAGTTCTTGCAGAGCTTCTAACAGGGGACAAACCTCTTTCTTTTAATAGGACAGAAGAGAACATTAGTCTTGCTATGCACTTTTTGTCTTGTTTAAAACAAGATCGAATTTTTGAAGCTATTCAAGTTggtattttaaatgataaaaacaagaaagagattAAGGAGGTTGCTATTATTGCAGCAAGGTGTATGAGACTTAGAGGTGATGAAAGACCTAGCATGAAGGAAGTGGCTATGGAGTTGGATGGTATAAGGTTAACTGAGAGGCATCCTTGGAATGAGACAGAGCAAAATTTTGAAGAGGGTCAAAGGTTACTTCATGAGGCATTTTCTAGCATTTATAATGAAAGTGGTGATGATAGCTATAATGTTGGATGTACTACTGGGTATGATAGCTTGAGAGATCAACCATTGATTGTTTTGGATGATGGAAGATGA 2256 0.3488 MKQNTKLTQLCTILIITISMVTIVFASDESFSTSLPGCKNTCGGVKVPYPFGISNSSIPNQGPCFLESKESKFNLTCENDTKLFLWNLQVLNISFLEEQIEISFYVSEYCDSNNYNDPYVNIADGFIISPKENKFLTVGCDNYGYLNSVYNKEIYSTGCLTRCNGNRKRIENGTCSGIGCCQVDIPTMMRNITIQAFRFDNSTESVGCGNSFVVKNGYYNFSVSHLDDFPYEELPLIIDWSVGNKSCKASKGEDDYVCKKNSDCFDEGIDFGYQCKCKKGYEGNPYHPDGCKDIDECKTSNNTCISAKHCRNTEGSYECFCPDGQSGNGTLAGGCNRRDLITKIAIGTSAGLIVLFVAISSLYLTFQKRKLIKLKQKFFQQNGGSILIQQLSTREDTSQSAQIFTEEELKKATKNYDESLIIGRGGFGTVFKGILPDNKIIAVKKSKIIDADQIEQFINEVVVLSQINHRNVVKLLGCCLETEVPSLVYEFVSNGTLFDFIQNTKDQANNPTWKTRLRIAAETAGALSYLHSAASVPIIHRDVKSTNILLDDNYTAKVSDFGASRLVPLDQTEIATMVQGTLGYLDPEYMQTHQLTEKSDVYSFGVVLAELLTGDKPLSFNRTEENISLAMHFLSCLKQDRIFEAIQVGILNDKNKKEIKEVAIIAARCMRLRGDERPSMKEVAMELDGIRLTERHPWNETEQNFEEGQRLLHEAFSSIYNESGDDSYNVGCTTGYDSLRDQPLIVLDDGR 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00927 751 ProSitePatterns Serine/Threonine protein kinases active-site signature. 538 550 IPR008271 GO:0004672|GO:0006468
Tsu01g00927 751 ProSiteProfiles EGF-like domain profile. 293 331 IPR000742 -
Tsu01g00927 751 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 310 321 IPR000152 -
Tsu01g00927 751 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 20 717 - -
Tsu01g00927 751 Pfam Wall-associated receptor kinase galacturonan-binding 38 102 IPR025287 GO:0030247
Tsu01g00927 751 CDD EGF_CA 293 327 - -
Tsu01g00927 751 SMART serkin_6 416 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00927 751 SUPERFAMILY Protein kinase-like (PK-like) 397 687 IPR011009 -
Tsu01g00927 751 Pfam Calcium-binding EGF domain 293 330 IPR001881 GO:0005509
Tsu01g00927 751 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 20 717 IPR045274 GO:0007166
Tsu01g00927 751 SMART egfca_6 293 336 IPR001881 GO:0005509
Tsu01g00927 751 SUPERFAMILY EGF/Laminin 293 328 - -
Tsu01g00927 751 Gene3D Laminin 245 332 - -
Tsu01g00927 751 ProSiteProfiles Protein kinase domain profile. 416 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00927 751 Gene3D Transferase(Phosphotransferase) domain 1 492 713 - -
Tsu01g00927 751 Pfam Protein kinase domain 418 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00927 751 ProSitePatterns Protein kinases ATP-binding region signature. 422 445 IPR017441 GO:0005524
Tsu01g00927 751 ProSitePatterns Calcium-binding EGF-like domain signature. 293 319 IPR018097 GO:0005509
Tsu01g00927 751 SMART egf_5 296 336 IPR000742 -
Tsu01g00927 751 SMART egf_5 246 292 IPR000742 -
Tsu01g00927 751 CDD STKc_IRAK 422 690 - -
Tsu01g00927 751 Gene3D Phosphorylase Kinase; domain 1 381 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00927 Tsu-Chr1 8487171 8514538 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00927 38 751 Receptor kinase-like Gene Family AT1G21230 45.417 0.0 596
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Tsu01g00927 Pkinase 1.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00927 - - gmx:106795446 954.896
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g02892 08 44164787 44167845 Tsu01g00927 01 8487171 8514538 PCT