Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00920 ATGTGCAGAGAAAAATCATTCTTCTGCTTCTTCCAAATTATGGTTGTTGTGGGATTACTGcttcataatcatcatcaaacatGTGATGCAACTACTACtagtaaaaaaaaccaaacatatTGTCCACCTTCTTCATGTGGAAAAATCACAAACATACAACATCCCTTTCGACTTAACAAAGATCCAATAGCCTGTGGTGATCCGAGATACGAGTTATCCTGCGAAAACAACATGACAGTGTTAACTCTATTTTCGGGTAAATACTATGTGAAATCAATCAACTACAAAAACTACACAATTCGGCTAATAGATCCCGGAATTCAAGAGGGTGATTGCTCCTCTATTCCTCGGTATTACTTATACACTTCAAATTTCACAAGTTATTACTTTAACAGTAATAGCGATGACGAGGATCCATATCAAACCTCCCAAAACAGAATAGCTTCTGGAAAAGTTACTTATGGTGATACTATAACATTACCAATGTTCCAGCACGTAATTTACATGAATTGTAGCAGTCCTGTACGAGATGATCCGGTGTACGTGGATACAGCCTCTTGCATCAAGTCGAATTCCCAAGGTGGCCATGTTTATGCCATTGCTGGGGATTTGAAGGTTGGTAACTTAAAAGACGATGACTGCCACGTGGAGGTTGTTACCGCGATATCTTTTTTCAGTTATAATTACAGCTCTTACAGCTCTGGTTATTGGATCATTCCGAATCAAAAGTTTTCGTACAGTGAAATTCATAGGATGTTGGTGGGTGGATTTGAGGTTTCTTGGATGAGTGGTCCTTGTGAAGATCATTGTGGAAAGCCAGATTGCTATTTGAGCGAAACCACTTGGAGTCTTGAATGCTTTGATCCTGCTGATTATTGTAAAACAACATTGGGATTTCATGTCAGATGCAGTGGTAAGAACATCtttacattttgtttttctgAAATCAGATCCCGACTACTGCATCCAATTGGTTTGACAGTAAACGATGGATCTGAtatgaaagaatcaaaattTGCTATTGTCATGGGAACAATCATTGgatatattttgttatcatttaTTATAGTGAGATCTACGTTAGGTATCATAGTTTTCTTTGCGAAAATGATACATACATATCGATTAAGGCATACATCGATATATGAAAACATCGAAGATTTTCTTCAAGGAAACTCCCTCACGCCAATCAGGTATTCATACAAAGAGATAAAGAACATGACAAGAGGTTTTAAGGACAAGTTGGGTGAAGGAGGCTATGGTAAAGTTTATAAGGGAAAGCTACGTAGTGGCCCTTTGGTAGCCATAAAGATGTTGGGGAAATCTAAGGGTAACCAAAATGGACAAGATTTCATTAATGAAGTTGCAACCATAGGAAAAATACATCACACCAATGTGGTGCGACTTATTGGATTTTGTGTTGAGGGTTCAAAGCGTGCTCTTGTTTATGATTTCATGCCCAATAGCTCTCTTGATAAATATATTTCCTCTAAAGAAGATCATATTCTCTTAACTTATAAACAAATGTACGACATCTCTCTTGGGGTGGCTCGCGGAATTGCTTATTTGCATCAAGGTTGTGAAAtgcaaattttacattttgataTCAAACCCCATAACATACTTCTTGACAAAGACTTCGTCGCCAAGGTTTCAGACTTTGGTCTGGCAAAACTTTATCCAGTTGAAAATAGCATTGTAACTATGACTGCTGCTAGAGGAACAATTGGTTACATGGCTCCAGAATTGTTCTACAAAAATATTGGTGGAGTTTCCTATAAGGCTGATGTTTATAGCTTTGGAATGCTATTAATGGAAATAGCAAACAGGAAAAGAAATCTGAACTCAAATGCAGATGATTCAATGCAAATATTCTTTCCCTATTGGATTTACAATGAATTGATTGAAGAAAGGGAGATAGAAATGTTGGGAAAAGTTACTGATGAGGATAAGAAAAATGTGAAGAAAATGTTCATAGTTGCTTTATGGTGTATACAATTGAACCCCAATGATCGTCCTTCAATGGACAGAGTAATAGAAATGCTGGAAGGAGATATTAAAGACATTGAAATTCCTCCAAAACCTTCTCCATATCCAACTGAAATTATGCAAGATCGTGTAACTAGCTCTAGTACATCTATATGGGATGATGATGCCACTGGATCAATCAGTTTTCTCGATGAAACTATGGAAGATCCTTTATTATAG 2208 0.3569 MCREKSFFCFFQIMVVVGLLLHNHHQTCDATTTSKKNQTYCPPSSCGKITNIQHPFRLNKDPIACGDPRYELSCENNMTVLTLFSGKYYVKSINYKNYTIRLIDPGIQEGDCSSIPRYYLYTSNFTSYYFNSNSDDEDPYQTSQNRIASGKVTYGDTITLPMFQHVIYMNCSSPVRDDPVYVDTASCIKSNSQGGHVYAIAGDLKVGNLKDDDCHVEVVTAISFFSYNYSSYSSGYWIIPNQKFSYSEIHRMLVGGFEVSWMSGPCEDHCGKPDCYLSETTWSLECFDPADYCKTTLGFHVRCSGKNIFTFCFSEIRSRLLHPIGLTVNDGSDMKESKFAIVMGTIIGYILLSFIIVRSTLGIIVFFAKMIHTYRLRHTSIYENIEDFLQGNSLTPIRYSYKEIKNMTRGFKDKLGEGGYGKVYKGKLRSGPLVAIKMLGKSKGNQNGQDFINEVATIGKIHHTNVVRLIGFCVEGSKRALVYDFMPNSSLDKYISSKEDHILLTYKQMYDISLGVARGIAYLHQGCEMQILHFDIKPHNILLDKDFVAKVSDFGLAKLYPVENSIVTMTAARGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEIANRKRNLNSNADDSMQIFFPYWIYNELIEEREIEMLGKVTDEDKKNVKKMFIVALWCIQLNPNDRPSMDRVIEMLEGDIKDIEIPPKPSPYPTEIMQDRVTSSSTSIWDDDATGSISFLDETMEDPLL 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00920 735 SMART serkin_6 409 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00920 735 Gene3D Phosphorylase Kinase; domain 1 385 485 - -
Tsu01g00920 735 ProSiteProfiles Protein kinase domain profile. 409 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00920 735 Gene3D Transferase(Phosphotransferase) domain 1 486 691 - -
Tsu01g00920 735 Pfam Protein kinase domain 412 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00920 735 PANTHER RUST RESISTANCE KINASE LR10-RELATED 7 711 IPR045874 GO:0004672
Tsu01g00920 735 SUPERFAMILY Protein kinase-like (PK-like) 399 713 IPR011009 -
Tsu01g00920 735 ProSitePatterns Protein kinases ATP-binding region signature. 415 437 IPR017441 GO:0005524
Tsu01g00920 735 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672|GO:0006468
Tsu01g00920 735 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 7 711 - -
Tsu01g00920 735 Pfam Wall-associated receptor kinase galacturonan-binding 41 104 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00920 Tsu-Chr1 8412268 8415331 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00920 36 724 Receptor kinase-like Gene Family AT5G38260 33.853 7.68e-106 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g00920 Pkinase 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00920 - - mtr:MTR_1g027050 1091.26