Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00916 ATGTCACTCACAATATTAGCACTGCTGTTACTTCTAATGAACCTTGGAAATGGTCAGATATTGAATAACAATAACTCCTCCGATGAATGCCCCTTCCGTCTATCTTGTCCGGCTAACATTCACAAATATAATCATCAAATCCTCGAGTTTCCAGCACTTCCAACTCCAGTAAAACTCCTCGCTACAGAAATAGATTATTATTCCTCTAGCAACAACATTACTTTCTTTAATTGCTCTTCAGTTCGAGAACACCATCTCAAAAACCGGGAACTATCAAGTTATTATGAACAAGACATGTTGTCTTGTCCGATTTATGTGGCTGATTCCGATGAAAGTGTCGTCGAGTTGGACTTATTACGCTGCACAAGAATGTTTGAGAATGTTTTGCCAACAGTAGCATTTGCTATAAGGGAAAACTCTGTCTACTTGAATTGGTCCGAAACAAATTTTCACAGTCAATGTTTAGAATATGAGCTACACAACAAATCAAAGAACCACACATCCATTATTTTAGATACAATAGGGGCAATCATTGGTTCGACTATGCTGGTTGTTTTGATTGGTGTCTTCTTTCGAGTATACTTCTATTTTAGAATGAAAGGAGAAGATCAAACGAGACTTGAAATCTTTTTGAAGGATTACGAAGCTTCAAAGCCAACAAGATTCTCTTATGCTGATATTAAGAGAATTACAGACCAATTCAAGGAAAAACTAGGCGAAGGAGCTCATGGAGCTGTCTATAAAGATATCGCTAATGGGATTGACTATCTTCACCAGGGCTGTGATCATAGAATTCTTCACTTTGATATCAATCCTCATAATGTCTTGTTAGATGACAATTTCATTCCAAAAATATCAGACTTCGGTTTAGCGAAGTTGTGCTCCAAAAATCAAAGTACTGTATCTATGACCGCAGCTAGGGGAACATTAGGATACATGGCGCCTGAAGTTTTTTCTAGAAATTTTGGAAATGTTTCTTATAAGTCTGATATATACAGTTACGGTATGTTACTGCTGGAGATGGTTGGAGGAAGAAAGAATACTAAAACAGTCATTAATGGTGAAGAAAATTTCGAAGTTTTGTATCCTGATTGGATCCACAGTTTGCTTGAACGGGGAGACATACATATCCCAATTGACGAAGAGGGAGATTTTAGAATTGCAAAGAAACTAGCAATTGTGGGACTTTGGTGCATTCAATGGCACTCAATGCATCGACCATCCATGAAAGCTGTGATACAAATGCTACAAGGAGAGGGAGACAAGTTAAAATTGGAAGTAAAAACATGGTTTCATCATTTTGAGTACAATATAGACAAAACTCAGGATAGTATTGTGTATTGGGTTTGGGAGCTTTATGGAAAAGgcgaaattgttagtgttgtGGATAAAAGGATAAGTTATGAAGAGAATGAAGTTGAGAGGGAAAAGTGGGAAGAAGTTGAAACTGTGCTTGTTCTTGGTTTGGCTTGTTGTCATCCAAATCCAAATGAAAGGCCATCAATGTGA 1509 0.3691 MSLTILALLLLLMNLGNGQILNNNNSSDECPFRLSCPANIHKYNHQILEFPALPTPVKLLATEIDYYSSSNNITFFNCSSVREHHLKNRELSSYYEQDMLSCPIYVADSDESVVELDLLRCTRMFENVLPTVAFAIRENSVYLNWSETNFHSQCLEYELHNKSKNHTSIILDTIGAIIGSTMLVVLIGVFFRVYFYFRMKGEDQTRLEIFLKDYEASKPTRFSYADIKRITDQFKEKLGEGAHGAVYKDIANGIDYLHQGCDHRILHFDINPHNVLLDDNFIPKISDFGLAKLCSKNQSTVSMTAARGTLGYMAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTKTVINGEENFEVLYPDWIHSLLERGDIHIPIDEEGDFRIAKKLAIVGLWCIQWHSMHRPSMKAVIQMLQGEGDKLKLEVKTWFHHFEYNIDKTQDSIVYWVWELYGKGEIVSVVDKRISYEENEVEREKWEEVETVLVLGLACCHPNPNERPSM 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00916 502 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 250 424 - -
Tsu01g00916 502 PANTHER RUST RESISTANCE KINASE LR10-RELATED 250 424 IPR045874 GO:0004672
Tsu01g00916 502 PANTHER RUST RESISTANCE KINASE LR10-RELATED 19 248 IPR045874 GO:0004672
Tsu01g00916 502 Gene3D Transferase(Phosphotransferase) domain 1 227 426 - -
Tsu01g00916 502 ProSiteProfiles Protein kinase domain profile. 118 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00916 502 Gene3D Transferase(Phosphotransferase) domain 1 427 502 - -
Tsu01g00916 502 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 19 248 - -
Tsu01g00916 502 SUPERFAMILY Protein kinase-like (PK-like) 248 416 IPR011009 -
Tsu01g00916 502 Pfam Protein kinase domain 235 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00916 Tsu-Chr1 8389229 8398312 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00916 250 433 Receptor kinase-like Gene Family AT5G38260 48.663 1.56e-56 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g00916 Pkinase 2.7e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00916 - - aip:107647782 432.18