Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00914 ATGGATCTCTTGATAAATTCATATTCTCTAAAGAAGGAAGTGTACGTAAATATAAGCTATAGCCAAATTTTTGACATATCAGTTGGAGTAGCTCGTGGGATTGCTTATCTTCACCATGGATGCGAAATGAAGATTTTGCATTTTGATATCAAGCCTCACAACATCCTTCTTGATGATAACTTCACCCCAAAAGTCTCTGACTTTGGATTGGCCAAACTCTATCCGGTAGAGAACAGCATCATCACAATGGCGGCAGCAAGAGGTACAATTGGATATATGGCTCCGGAATTGTTCTACCAAAATATTGGAGGAGTATCTTATAAGGCTGATGTTTATAGCTTTGGAATGCTTTTAATGGAGATggcaaacaaaaggaaaaaccTAAATGCCAAGGCAGAGCATTCGAGCCAGCTTTACTTTCCTTTatggatttatgatcaagttgaaaaagagaaagacATAGAAATGGAAGATACCACggaggaagaaaagaaaatagtaaagaAGATGATCATAGTTGCACTTTGGTGTATACAATTAAAACCAAATGATCGACCATCAATGAGCAATGTAGTTGAGATGCTCCAAGGAAATATCGAAAGCCTTAAAATGCCTCCAAAGCCAACCCTTTATCCAGATGACACAATTACAAATGATGAAAGTAACAACTATGACGAAACAAGTTCGAGTAATTACACTAGTTCTTATGATTCTGTGGAAATATCAAATAATCATCCAATAGAGAATATTGCTTGA 756 0.3307 MDLLINSYSLKKEVYVNISYSQIFDISVGVARGIAYLHHGCEMKILHFDIKPHNILLDDNFTPKVSDFGLAKLYPVENSIITMAAARGTIGYMAPELFYQNIGGVSYKADVYSFGMLLMEMANKRKNLNAKAEHSSQLYFPLWIYDQVEKEKDIEMEDTTEEEKKIVKKMIIVALWCIQLKPNDRPSMSNVVEMLQGNIESLKMPPKPTLYPDDTITNDESNNYDETSSSNYTSSYDSVEISNNHPIENIA 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00914 251 MobiDBLite consensus disorder prediction 203 251 - -
Tsu01g00914 251 MobiDBLite consensus disorder prediction 214 251 - -
Tsu01g00914 251 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 6 226 - -
Tsu01g00914 251 SUPERFAMILY Protein kinase-like (PK-like) 18 195 IPR011009 -
Tsu01g00914 251 Gene3D Transferase(Phosphotransferase) domain 1 7 210 - -
Tsu01g00914 251 Pfam Protein kinase domain 17 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00914 251 ProSitePatterns Serine/Threonine protein kinases active-site signature. 45 57 IPR008271 GO:0004672|GO:0006468
Tsu01g00914 251 PANTHER RUST RESISTANCE KINASE LR10-RELATED 6 226 IPR045874 GO:0004672
Tsu01g00914 251 ProSiteProfiles Protein kinase domain profile. 1 210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00914 251 SMART serkin_6 1 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00914 Tsu-Chr1 8378115 8378870 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00914 9 229 Receptor kinase-like Gene Family AT5G38280 45.852 1.43e-70 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g00914 Pkinase 9.3e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00914 - - pvu:PHAVU_001G048700g 335.109