Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00913 ATGGCAGGAGCATATACTACTATGATCACACTACTGCTTCTTCTCCTGCTTATCGATAATGGCAGCAGTAATGACGACTGCAGAAAATTGTCTTGTGGACCTAACGAACCGCTTATTAGTTTTCCCTTCCAACTTGTTAAAGGGTCACAAGATCAATGTTCTTATCCTGAGTTTTGCCTATATTGTACTCAAAATAACAGAACCATGATTGTGCTAACTACCACTTCAGGTTTAATTAACTTCTTTGTCTATAAAATTGTCTACGAATTACGCTTGCTTTCAGTTTCCGATCCAGAGAATTGCCTTCCGAATAAGTTTTTGAGACTTAACAATTCATCATTTCTACCTTACCAATTTTATTCACTATCAGAAACAAAATTTTCCTTCTTCAATTGCTCTTCTTCTAGGAAACGACACTTGAGAAACTTTGAACAGACGTATTCAAATTCACAAGATATGATTACATGTCCAATTTACGCTTCTAATTCCAAAGACAGTGTCCTTACAATGGACCTTGTATCGTGTAGCAAGATGTTCGACGTTAAAATATCCACAGTGGCAGAATACTTGTCGTATAATCAACTGCGTTTGAGTTGGCCCAAAATAAATTGTACTGAGTGTGAAGCGAAAGGCTTGACATGCAAATGGAAGGAAAACAGCACAAAAGGCAAAACTGAATGTATTGATTGCAACAATAAAcggaaaacaattcaaatacCAAATTCTCTTATATACGCTTCTACAGGTTCAATTCTATCGGGGATGGTTCTCATCGCACTATTTAAGATACATCTCTACtttagaaagaaagaagaggatCAAATTAGAGTCGATAAGTTTTTAGAGGATTATAGAGCACAAAAGCCTGCTAGATTTTCGTATGCTGATATAAAAAGAATTACGAATGGCTTTAAGGAGAAACTTGGAGAAGGAGCTCACGGATCTGTGTTTAAAGGAAAACTCTCAAATGAGATACTTGTGGCCGTGAAAATGCTCAACAATACATCAGGAGAAGGAAAGGAGTTCGTCAATGAAGTGGGAATTATGGGAAAAATTCACCACATCAATGTCGTTCGCTTGCTTGGATTTTGTGCTGATGGAATCCACCGTGCTCTTGTCTACAATTTGTTTCCTAATGGTTCGCTGCAGAGTTTTATATCTCCACCCGATAACAAAGACCATTTCTTGGGGTGGGAGAAACTACAACAAATTGGTATTGGTATAGCCAAAGGAATTGAGTATCTTCATCAAGGTTGTAACCATCCAATCATTCACTTTGATATCAACCCTCACAATGTTTTGCTTGATGACTCCTTCAGTCCAAAAATTTCAGATTTCGGTCTTGCCAAATTCTGTTCCAAGAATCTCAGTGTTGTTTCCATGACAGCAGCTAAAGGAACAATGGGATACATGGCGCCGGAAGTTCTATCAAGAAATTTTGGAAATGTATCTCTTAAGTCAGATATTTACAGTTACGGAATGTTGTTGCTAGAAATGGTTGGAGGGAGAAAGAATGTAGATATGTCGTCATCTGTAGAAACTTTTAATGTGTTATATCCAGAATGGATCCATAACTTATTAGAAGGAGATGTACATATTCATATTGAGGACGAAAGTGATGTTAAAATTGCAAGAAAACTTGCAATTGTCGGACTCTGGTGCATTCAATGGCAACCAATAAACCGTCCATCGATAAAAAATGTTGTGCAAATGTTGGAAACAGGAGAGGTTAGCCGGTTAATCGTACCTCCTAATCCTTTTCACTCGACATCTTCCATGACCGCTAATAATCAATGCACTTTGGCAAGAAGTTTCCAAATGGAAGTCATTCAAGAATAA 1839 0.3681 MAGAYTTMITLLLLLLLIDNGSSNDDCRKLSCGPNEPLISFPFQLVKGSQDQCSYPEFCLYCTQNNRTMIVLTTTSGLINFFVYKIVYELRLLSVSDPENCLPNKFLRLNNSSFLPYQFYSLSETKFSFFNCSSSRKRHLRNFEQTYSNSQDMITCPIYASNSKDSVLTMDLVSCSKMFDVKISTVAEYLSYNQLRLSWPKINCTECEAKGLTCKWKENSTKGKTECIDCNNKRKTIQIPNSLIYASTGSILSGMVLIALFKIHLYFRKKEEDQIRVDKFLEDYRAQKPARFSYADIKRITNGFKEKLGEGAHGSVFKGKLSNEILVAVKMLNNTSGEGKEFVNEVGIMGKIHHINVVRLLGFCADGIHRALVYNLFPNGSLQSFISPPDNKDHFLGWEKLQQIGIGIAKGIEYLHQGCNHPIIHFDINPHNVLLDDSFSPKISDFGLAKFCSKNLSVVSMTAAKGTMGYMAPEVLSRNFGNVSLKSDIYSYGMLLLEMVGGRKNVDMSSSVETFNVLYPEWIHNLLEGDVHIHIEDESDVKIARKLAIVGLWCIQWQPINRPSIKNVVQMLETGEVSRLIVPPNPFHSTSSMTANNQCTLARSFQMEVIQE 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00913 612 Gene3D Transferase(Phosphotransferase) domain 1 377 580 - -
Tsu01g00913 612 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
Tsu01g00913 612 Pfam Protein kinase domain 305 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00913 612 Pfam Wall-associated receptor kinase galacturonan-binding 27 97 IPR025287 GO:0030247
Tsu01g00913 612 ProSiteProfiles Protein kinase domain profile. 302 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00913 612 Gene3D Phosphorylase Kinase; domain 1 276 376 - -
Tsu01g00913 612 PANTHER RECEPTOR-LIKE KINASE 15 612 - -
Tsu01g00913 612 PANTHER RUST RESISTANCE KINASE LR10-RELATED 15 612 IPR045874 GO:0004672
Tsu01g00913 612 SUPERFAMILY Protein kinase-like (PK-like) 285 573 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00913 Tsu-Chr1 8350068 8377027 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00913 10 586 Receptor kinase-like Gene Family AT5G38260 32.680 2.38e-95 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g00913 Pkinase 2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00913 - - gmx:100790964 840.876