Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00910 ATGGAAGAAGCATATACTACTACGATCACGCTACTGCTTCTTCTCCTGCTTATCAACAATGGCAGCAGTGACTACGTGTGCACAAAATTATCTTGTGGACCTAATGAACCGCTTATTAGTTTTCCCTTTCAACTTGTTAAAGGGTCACAAGATCAATGTTCTTATCCTGAGTTTTGCCTATATTGTACTCAAAATAACAGAACCATGATTGTGCTCTCTACCACTTCAGGTCTAATTAACTTCTTTGTCTATGAAATTGTCTATGAATCACGCTTTCTTTCAATTTCCGATCCAGAGAATTGCCTTCCGAATAAGTTTTTGAGGCTTAACAATTCATCATTTCTACCTTACCAATTTTATTCACCATCAGAAACAAAATATTCCTTCTTCAATTGCTCTTCATCTAGGAAACAACACTTGAGAAACTTTGAACAGACATATTCAAATTCGGAAGATATGATTACATGTCCAATTTACACTTTTAATTCCCGCGACAGTGTCCTCACATTGGATCTTGTATCATGTACCAAGATGTTCGACGTTCAAATGTCCACCGAGGCAGAATACTTGTCGCATAATCAACTGAGTTTGAGTTGGCCCAAAATAAATTGTACAGAATGTGAAGCGAAAGGCTTGACATGCAAATGGAAGGAAAACAGCACAAAAGGCGAAACTGAATGTTTTGATTGCAACAATAAAcggaaaacaattcaaattccaAATTCTCTTATATACGCTTCTACAGGTTCAATTCTTTTGGGGCTGGTGCTCGTCGCATTATTTAAGATACAcctttattttagaaaaaaagaagaggatcAAATTAGAGTTGATAAATTTTTAGAGGATTATAAAGCACAAAAGCCTGCCAGATTTTCATATGCTGATATAAAAAGAATCACGGGTGGGTTTAAGGAAAAGCTTGGAGAAGGAGCTCATGGAACTGTGTTCAAAGGAGAGCTCTCAAGCGAGATACTCGTGGCTGTGAAAATGCTCAACAATACAGCAGGAGAAGGGAAAGAATTCATCACTGAAGTGGAAATTATGGGCAAAATCCACCACANATACACAGTGCCAAAGCCTCCTTCACCCAACTTGTCTTTGAAACCTTTAGCCATTTTCTTGATTTCTTTGTATGAATATCCAATGGGCATGagattgttttgttgttgtagatacATTTCAATATATTCAAACATTGAAAGATGCCTTTTCCCTCCATTTGTATATTAA 1233 0.3504 MEEAYTTTITLLLLLLLINNGSSDYVCTKLSCGPNEPLISFPFQLVKGSQDQCSYPEFCLYCTQNNRTMIVLSTTSGLINFFVYEIVYESRFLSISDPENCLPNKFLRLNNSSFLPYQFYSPSETKYSFFNCSSSRKQHLRNFEQTYSNSEDMITCPIYTFNSRDSVLTLDLVSCTKMFDVQMSTEAEYLSHNQLSLSWPKINCTECEAKGLTCKWKENSTKGETECFDCNNKRKTIQIPNSLIYASTGSILLGLVLVALFKIHLYFRKKEEDQIRVDKFLEDYKAQKPARFSYADIKRITGGFKEKLGEGAHGTVFKGELSSEILVAVKMLNNTAGEGKEFITEVEIMGKIHHXYTVPKPPSPNLSLKPLAIFLISLYEYPMGMRLFCCCRYISIYSNIERCLFPPFVY 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00910 410 PANTHER RUST RESISTANCE KINASE LR10-RELATED 17 356 IPR045874 GO:0004672
Tsu01g00910 410 SUPERFAMILY Protein kinase-like (PK-like) 286 358 IPR011009 -
Tsu01g00910 410 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
Tsu01g00910 410 PANTHER RECEPTOR-LIKE KINASE 17 356 - -
Tsu01g00910 410 Pfam Wall-associated receptor kinase galacturonan-binding 27 97 IPR025287 GO:0030247
Tsu01g00910 410 Pfam Protein tyrosine and serine/threonine kinase 304 356 IPR001245 GO:0004672|GO:0006468
Tsu01g00910 410 Gene3D Phosphorylase Kinase; domain 1 276 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00910 Tsu-Chr1 8346294 8347607 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00910 32 358 Receptor kinase-like Gene Family AT5G38260 25.000 6.22e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g00910 GUB_WAK_bind 2.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00910 - - gmx:100811907 429.098