Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00909 ATGTTGTCGGTGAGAGTGATATCGGTACTGTTGTTGTCATTTTTGGTTATACTACAGTATAGTAGTAGCAGTAGTAGTCTTACTATTGAGCAACAGCATACATGTCCACCTTCATCTTGTGGGAAAATTTCCGGCATAAGTTATCCATTCCGATTAAAAGATGACCCAAAACACTGCGGAGACAACAGGTATGAGCTATCAtgtgaaaataatgtgacaactTTATATTTGTACTCTTACAAATATCATGTGCAATCCATCAACTACAACAATTTCACAATCCGGTTAGTCGATCCTGGTGTTCAACAATCTAATTGCTCTTCACTTCCTCTCAATTTCTTGTCTGAATCTAATTTCTGTGATACTTATCATTACGACAACAAATATTGCACGGATCCATACCAAGCATCAGGATATTATGATGCTGTTTTTGAGCATATAGTATACTTGAATTGTAGCCATCAAGTTACTAACAATTCTAAATATGTGAATACTACTCCGTGTCTCGATCAGAACTCGGGAGGGTATTATACTTATGCTATGGCTGGTGATTTAATTGCTGAAGATTTTGAAGTAGATTGTCGTGTAAAATTGGTTACTCCAACATCTTGGTTGAAAAATTTGCAAAGAAATCAAGAAATTTCTTCCTATGATGTGATTCATAAGGCGTTAGTGTATGGATTTGAGATTTCATGGTTGAACCTTCCTTGTCAGGATCTTCAATGTGGAGATTCAATACGTTGCGTCTTCGATTCAAACCAGAAACTTCTATGCTATGATCTCCCCTGCAATAAAACCTGGGGAGGAGATCCGAGAAAACGTCCTTGTGGATTATTTGGATTGATTGAAGAAGGACCAAACAAGTTCATAGGAAAATGCTTTCGTTATTACTGGCCACTCTTTGTGGCTAAATATATGTTTGGGATGACATTATTTATTGCCTTGTTAATATACAAATGGAGGAAAAGGCATCTTTCAATGTTTGAATATATTGAAATatatctacaacaacaaaacaatctCATGCCCATTGGATATTCATACAAAGAAATCAAGAAAATGGCTAAAGGTTTCAAAGACAAGTTGGGTGAAGGAGGCTTTGGCACTGTGTATAAGGGGAACCTTCGCAGCGGCCCTTGTGTTGCAATCAAGATGTTGGGAAAGTCGAAAGGTAATGGGCACGACTTTATTAGTGAAGTAGCAACCATCGGAAGGATACATCATTTGAATGTCGTGCAATTAATCGGATTTTGTGCTGAGGGATCCAAACGTGCTCTTGTTTTTGAATTCATGCCTAATGGATCTCTTGATAAATTCATATTCTCTAAAGAAGGAAGTGTAAATATAAGCTATAGCCAAATTATTGACATATCAGTTGGAATAGCTCGTGGGATTGCTTATCTTCACCATGGATGCGAAATGAAGATTTTGCATTTTGATATCAAGCCTCATAACATCCTACTTGATGAGAACTTCACCCCAAAAGTCTCTGACTTTGGATTGGCCAAGCTATATCCGGTAGAGAATAGCATTATCACAATGACCGCAGCAAGAGGTACAATTGGATATATGGCTCCAGAATTGTTCTACCAAAATATTGGAGGAGTGTCTTATAAGGCTGATGTTTATAGCTTTGGAATGCTTTTAATGGAGATggcaaacaaaaggaaaaaccTAAATGCCAAGGCAGAGCATTCTAGTCAACTTTACTTTCCTTTatggatttatgatcaagttgaaaaagagaaagacATAGAAATGGAAGATACCACggaggaagaaaagaaaatagtaaagaAGATGATCATTGTTGCACTTTGGTGTATACAATTAAAACCAGATGATCGACCATCAATGAGCGATGTAGTGGAGATGCTCCAAGGAAATATTGAAAGCCTTAAAATGCCTCCAAAGCCAACCCTTTATCCAGATGACACAAGGGACGACTTTGACGAAACAAGTTCGAACAAAACTCAGGATAGTATTGTGTATTGGGTTTGGGAGCTTTATGGAAAAGgcgaaattgttagtgttgtGGATAAAAGGATAAGTTATGAAGAGAATGAAGTTGAGAGGGAAAAGTGGGAAGAAGTTGAAACTGTGCTTGTTCTTGGTTTGGCTTGTTGTCATCCAAATCCAAATGAAAGGCCATCAATGTGA 2160 0.3532 MLSVRVISVLLLSFLVILQYSSSSSSLTIEQQHTCPPSSCGKISGISYPFRLKDDPKHCGDNRYELSCENNVTTLYLYSYKYHVQSINYNNFTIRLVDPGVQQSNCSSLPLNFLSESNFCDTYHYDNKYCTDPYQASGYYDAVFEHIVYLNCSHQVTNNSKYVNTTPCLDQNSGGYYTYAMAGDLIAEDFEVDCRVKLVTPTSWLKNLQRNQEISSYDVIHKALVYGFEISWLNLPCQDLQCGDSIRCVFDSNQKLLCYDLPCNKTWGGDPRKRPCGLFGLIEEGPNKFIGKCFRYYWPLFVAKYMFGMTLFIALLIYKWRKRHLSMFEYIEIYLQQQNNLMPIGYSYKEIKKMAKGFKDKLGEGGFGTVYKGNLRSGPCVAIKMLGKSKGNGHDFISEVATIGRIHHLNVVQLIGFCAEGSKRALVFEFMPNGSLDKFIFSKEGSVNISYSQIIDISVGIARGIAYLHHGCEMKILHFDIKPHNILLDENFTPKVSDFGLAKLYPVENSIITMTAARGTIGYMAPELFYQNIGGVSYKADVYSFGMLLMEMANKRKNLNAKAEHSSQLYFPLWIYDQVEKEKDIEMEDTTEEEKKIVKKMIIVALWCIQLKPDDRPSMSDVVEMLQGNIESLKMPPKPTLYPDDTRDDFDETSSNKTQDSIVYWVWELYGKGEIVSVVDKRISYEENEVEREKWEEVETVLVLGLACCHPNPNERPSM 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00909 719 MobiDBLite consensus disorder prediction 641 655 - -
Tsu01g00909 719 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 300 655 - -
Tsu01g00909 719 ProSiteProfiles Protein kinase domain profile. 356 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00909 719 Gene3D Transferase(Phosphotransferase) domain 1 646 719 - -
Tsu01g00909 719 SUPERFAMILY Protein kinase-like (PK-like) 337 626 IPR011009 -
Tsu01g00909 719 PANTHER RUST RESISTANCE KINASE LR10-RELATED 25 255 IPR045874 GO:0004672
Tsu01g00909 719 Pfam Protein kinase domain 359 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00909 719 Pfam Wall-associated receptor kinase galacturonan-binding 35 98 IPR025287 GO:0030247
Tsu01g00909 719 MobiDBLite consensus disorder prediction 636 655 - -
Tsu01g00909 719 SMART serkin_6 356 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00909 719 Gene3D Phosphorylase Kinase; domain 1 334 430 - -
Tsu01g00909 719 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 25 255 - -
Tsu01g00909 719 PANTHER RUST RESISTANCE KINASE LR10-RELATED 300 655 IPR045874 GO:0004672
Tsu01g00909 719 Gene3D Transferase(Phosphotransferase) domain 1 431 636 - -
Tsu01g00909 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Tsu01g00909 719 ProSitePatterns Protein kinases ATP-binding region signature. 362 384 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00909 Tsu-Chr1 8342413 8345535 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00909 1 642 Receptor kinase-like Gene Family AT5G38260 36.036 6.14e-118 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu01g00909 Pkinase 5.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00909 - - gmx:100305367 827.394