Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00899 ATGGACGGTGACCGAAAAATGGCCGTCCCTCAGATGGATGGAGACGGTGATGGTGCTCAGAAAATTAGAGCAGCATTGCACGGGAGGACTACTGGTCCTACAAGGCGTTCTACAAAAGGGCAATGGACTCCCGAGGAGGATGAGACATTGCGGCTTGCTGTTCAACGTTTCCAAGGAAAGAATTGGAAAAAAATAGCGGAGTGTTTCAAGGATAGAACTGATGTCCAATGCTTACATAGGTGGCAGAAAGTGTTGAATCCTGAACTTGTAAAAGGGCCATGGTCTAAAGAGGAAGATGAAGTGATGATTGAATTGGTGAACAAATATGGGCCTAAAAAGTGGTCAACTATAGCACAGCATTTACCTGGACGTATTGGGAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTGCTATAAACAAGGAAGCATGGACACAGGAAGAGGAGTTGGCTCTAATACGTGCTCATCAGATTTATGGGAACAAATGGGCGGAATTAACAAAGTTTTTGCCTGGAAGGACAGACAATGCTATTAAAAACCACTGGAACAGTTCGGTCAAAAAGAAATTGGATTCTTACTTGGCATCAGGCCTGCTTACTCAGTTGCAATCTGTACCTCATGTTGGAAATCCTAGTCAACCAACATCTTCAAGGTTGCAATgtaaggaagaagatgatgttcTTCAGGGGACTGAAGGAGATGAATTTTTAGAGTGTAGCCACGAGTCAGCTGATGCTCTCCAATTTCCATCCACTAGAGAGATGACCAGTGTTGACTTACAAACTGTAGAGGGATATAGGCCAAATGAAGAATGTAGTCTTGCGACAGATCATAGTCCAAGTCAAGCACCCTGTTCAGAGCCATATTATCTAGCAATTGACGCTGTTACTTTATGCATCTCAGAAATTTCTCATCATGATGCATGTTCTTCTGAATACAGTGAACGTATGCATGAACCAAATTCTACAAATGAGGATGGCCAGTTTAATTTACATTCCTTGCCCAATATTTCATCAATGGAATTAGGGGAGGACTCCTCGCAGTTGCAAGGAGATTGTACAGATCCTAGTGGAATATGCGACTTGGTGAATGTTCCATATCAAACTTCAGTGGATTTAGCTGTTTCAACGCCCATGGAAACTACATCTATGGATTCTGCTAAACCAGATAATATGTTGATATCTGACGATGAATGTTGCAGAGTCCTGTTTTCAGAGGCAAATCACGATAGATGTTTTATCCCTGGAGATTATAATAAAGGTGTTGATGCTGTTGAATTTTCTGGTCACCCTGCGGTTTGTCAGTCATGTCATATTCAGATTTCCGAAACTAGTGCAACCTCAACGCAGCCAATATCTTGTCCTCAGTGTTCTAATAATTTTACCCGTCCAGTACATTCTGCTGAGCATGAGGATCAACAGTTTGTCTCCAGAGCACATGATGATGACTTCACTTATGCCAATGACACATCAAGTTCTCGTTGTATTGACGCTATAGATAGTACAGTAATGCAAGATGAAAAGTCAAACATGCACACAGAAAAGGAGGACAACCGAGCATTATGTTATGAACCTCCCCGTTTTCCAAGCTTGGATATTCCTTTCTTGAGCTGTGATCTTGTACAATCTGGGGGTGATATGCAGCAAGAGTTTAGTCCTCTGGGTATCCGCCAGTTTATGATGTCTTCTATGAACTGTCTGACTCCGTCAAGGTTGTGGGACTCACCTTCTCGTGATGATAGTCCAGAAGCATTATTGAAAAGTGCAGCTAAAACTTTTACGGGTACTCCATCAATATTAAAGAAACGGTGCCGAGATTTGTTATCACCACTTTCAGATAAAAGAATTGGTAAGAAACTTGAGACTGACATGTCATCCTCTTTGGCTAAAGCCTTCTCTAGTTTGGAAGCAGATATACTTTCTCCATCTTCATTGCAAAAGCAAAATTCCGGGGCTTCTGGTTTGGGCGACGATAAAGAAAATTGTGGAGAAGCTGATAAAGGTAAACAAGTAGAGGAGACAATTAAATCTGTAATTTTGGAAGAAAATAAGACTCAAAGAGATACTCTTGACAGTAATTCTCCTGGTAAGGTTAAGAAGCAACCTTTTGCTGTCGATTCCAAAATGAAGATTGACGCTGCTGCTGCTGAGATTTTGCAGCAATCTTCTGGAGTTTTGTCTGAACATGATACGAACGACCTTTCATTATATTCATCTGACCAAGTTGGTTTTAGAGACAGAGTTCCCAGAAACTCGAACAATAGGAGTTCGGAAATAACTCCAAACCAGAGCATCCCTTCAAAATTATCTTCTGAGAACCAATGCTCAAGGTTTAGCTCTCCTTGTGTTCGTGCAAAGGAGCATGAAAGTCTTACAGTTTCAGTTACTCGTGTAAAAGCTCCAGAGGCGAATTTGAGTGATCAAAGTAAAAATGATGGTGGTTTTGAAATGTGTAGCATATTTGGTGGAACACCTTTCAGGAAAGGTTTTGAATCACCTTCTCCATGGAAATCTCCTTGGCTCAGGAATACTTTTCTCTGTAGCCCTAATCCTGAATTAACAATTGAGGATTTTGGATTTTTCAAGAGCCCGGGAGGTGATAAAAGCTACGATGCTATCGGGTTGTTAAAACAGGTCGGTGAACAAACTGCTGCAACATATGAAAATGCACAggagattttgaaaaatgaaactCCTAAAGCATTACCTAAAGATGCATCTGGAAACGATAAGGATAGCGACGAGGAAAACAACAATCCTAGCAAGGGAAACAGTtctaaatatatttcaaatgatTTGGTTGAGTGTCGCATGCTTGATTTTAGTGAATGTGGAACACCAGCAAAGGGTGATAGCAGCAAATCCTCAGCTAGTCAGCAATGA 2889 0.4057 MDGDRKMAVPQMDGDGDGAQKIRAALHGRTTGPTRRSTKGQWTPEEDETLRLAVQRFQGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEVMIELVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPAINKEAWTQEEELALIRAHQIYGNKWAELTKFLPGRTDNAIKNHWNSSVKKKLDSYLASGLLTQLQSVPHVGNPSQPTSSRLQCKEEDDVLQGTEGDEFLECSHESADALQFPSTREMTSVDLQTVEGYRPNEECSLATDHSPSQAPCSEPYYLAIDAVTLCISEISHHDACSSEYSERMHEPNSTNEDGQFNLHSLPNISSMELGEDSSQLQGDCTDPSGICDLVNVPYQTSVDLAVSTPMETTSMDSAKPDNMLISDDECCRVLFSEANHDRCFIPGDYNKGVDAVEFSGHPAVCQSCHIQISETSATSTQPISCPQCSNNFTRPVHSAEHEDQQFVSRAHDDDFTYANDTSSSRCIDAIDSTVMQDEKSNMHTEKEDNRALCYEPPRFPSLDIPFLSCDLVQSGGDMQQEFSPLGIRQFMMSSMNCLTPSRLWDSPSRDDSPEALLKSAAKTFTGTPSILKKRCRDLLSPLSDKRIGKKLETDMSSSLAKAFSSLEADILSPSSLQKQNSGASGLGDDKENCGEADKGKQVEETIKSVILEENKTQRDTLDSNSPGKVKKQPFAVDSKMKIDAAAAEILQQSSGVLSEHDTNDLSLYSSDQVGFRDRVPRNSNNRSSEITPNQSIPSKLSSENQCSRFSSPCVRAKEHESLTVSVTRVKAPEANLSDQSKNDGGFEMCSIFGGTPFRKGFESPSPWKSPWLRNTFLCSPNPELTIEDFGFFKSPGGDKSYDAIGLLKQVGEQTAATYENAQEILKNETPKALPKDASGNDKDSDEENNNPSKGNSSKYISNDLVECRMLDFSECGTPAKGDSSKSSASQQ 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00899 962 Pfam Myb-like DNA-binding domain 39 85 IPR001005 -
Tsu01g00899 962 Pfam Myb-like DNA-binding domain 91 137 IPR001005 -
Tsu01g00899 962 Pfam Myb-like DNA-binding domain 143 185 IPR001005 -
Tsu01g00899 962 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 141 IPR017930 -
Tsu01g00899 962 Gene3D - 144 206 - -
Tsu01g00899 962 Gene3D - 91 142 - -
Tsu01g00899 962 SMART sant 38 87 IPR001005 -
Tsu01g00899 962 SMART sant 90 139 IPR001005 -
Tsu01g00899 962 SMART sant 142 190 IPR001005 -
Tsu01g00899 962 PANTHER MYB PROTEIN-RELATED 538 954 - -
Tsu01g00899 962 PANTHER MYB PROTEIN-RELATED 6 467 - -
Tsu01g00899 962 PANTHER TRANSCRIPTION REPRESSOR MYB5 538 954 - -
Tsu01g00899 962 MobiDBLite consensus disorder prediction 645 705 - -
Tsu01g00899 962 CDD SANT 42 85 IPR001005 -
Tsu01g00899 962 ProSiteProfiles Myb-like domain profile. 86 137 IPR001005 -
Tsu01g00899 962 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 142 192 IPR017930 -
Tsu01g00899 962 SUPERFAMILY Homeodomain-like 88 184 IPR009057 -
Tsu01g00899 962 MobiDBLite consensus disorder prediction 894 931 - -
Tsu01g00899 962 CDD SANT 145 185 IPR001005 -
Tsu01g00899 962 SUPERFAMILY Homeodomain-like 40 95 IPR009057 -
Tsu01g00899 962 CDD SANT 93 137 IPR001005 -
Tsu01g00899 962 PANTHER TRANSCRIPTION REPRESSOR MYB5 6 467 - -
Tsu01g00899 962 MobiDBLite consensus disorder prediction 661 690 - -
Tsu01g00899 962 ProSiteProfiles Myb-like domain profile. 138 188 IPR001005 -
Tsu01g00899 962 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 85 IPR017930 -
Tsu01g00899 962 MobiDBLite consensus disorder prediction 739 775 - -
Tsu01g00899 962 ProSiteProfiles Myb-like domain profile. 34 85 IPR001005 -
Tsu01g00899 962 MobiDBLite consensus disorder prediction 906 920 - -
Tsu01g00899 962 MobiDBLite consensus disorder prediction 1 44 - -
Tsu01g00899 962 Gene3D - 38 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00899 Tsu-Chr1 8211414 8218117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00899 20 663 MYB Transcription Factor Family AT5G11510 40.147 9.99e-149 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu01g00899 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00899 - K09420 aprc:113848458 1271.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00899 01 8211414 8218117 Tsu01g00899 01 8211414 8218117 ECH