Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00892 ATGGAAAGAGTTGTTGGAGGAAAGTATAGAATTGGTCGGAAAATTGGTAGTGGATCATTTGGTGAAATTTATATTGgGGCACATGTTGTGACTTCTGAGCTTGTTGCCATTAAGAAGGAGAGCAAGAAAACCAAACAACCACAGCTACTATATGAGGCAAAGTTATATAATATTCTTAAAGGAGGAAGTGGTATTCCAAGAATGAAATGGTTTGGTACCGATGGAGACTATAATGTTCTAGTTCTTGAACTTATGGGACCGAGTCTCGAAGACCTCCTTTACTACTGTAGTGGCAAGTTTTCGCTAAAATCGGTTTTGATGTTGGCTGATCAGATGCTTACGAGGATAGAGTTTTTACATTCGAAGGGATTACTGCATAGAGATATCAAACCGGATAACTTCCTCATGGGTCTTGGGAAGAAAGCAACTCAGGTTTGTATGATTGATTTTGGACTTTCAAAAGGATATAGGGATCCTATCAGTTACAAGCATATCCCTTACAGAGAGAACAAAAACTTAACAGGAACAGCGCGTTATGCAAGTTGCAATACTCACAAAGGAATCGAGCAAAGTCGCAGAGATGATTTGGAGTCTCTTGGCTATGTTCTTTTGTACTTTTTAAGAGGAAGCCTTCCTTGGCAGGGTCTACAAGCTGCCAACAGAAtgcaaaaatatgaaaaaatttgcAATATGAAGTTCTCAATTCGTGTTGAGGTACTTTGCAAGTCATATCCCGTGGAGTTTGCATCTTACTTTCATTATTGCCGCTCCTTGTCATTTGATCAACGACCAGATTATGGATATTTGAAGCGCCTTTTTCGTGAATTGTTCACTTCTAAAGGATATGAGGCTGACTACTTATATGATTGGACGATTTTAAAATATCAGGAGATTCAACAGGCAAAGGCACAAAATCTATCAATTGCTCCAGTTGCTTTGCCTACCAGTCTTGAGCCAGTGGATGCGGATGAGCATACAGAAGTCAATGATTGTACTCAAAATGATGTGACAAAACCAACAATCTATACCGATCGTCCGCGTGTTTGTATGAAGCTCAGGGTAGCAAATGTTGAAAATACGGATCTTGATGATGAGATTGAAACAGATAAACAGAATGTGAATAATGGTTTACCAATTTCCACTGTCACACCTATAGTTTCTACAGAAAATGTCCCGAAACCAGAAAGCACTGTAGAAGCCCCAAACCCGGATGGCGTGTTAGAGAATAAATGTGGTGATTCGGGTGATGTTGTTCCTTCACTACGCCGAGTTTCATCCATCAATTAG 1287 0.3924 MERVVGGKYRIGRKIGSGSFGEIYIGAHVVTSELVAIKKESKKTKQPQLLYEAKLYNILKGGSGIPRMKWFGTDGDYNVLVLELMGPSLEDLLYYCSGKFSLKSVLMLADQMLTRIEFLHSKGLLHRDIKPDNFLMGLGKKATQVCMIDFGLSKGYRDPISYKHIPYRENKNLTGTARYASCNTHKGIEQSRRDDLESLGYVLLYFLRGSLPWQGLQAANRMQKYEKICNMKFSIRVEVLCKSYPVEFASYFHYCRSLSFDQRPDYGYLKRLFRELFTSKGYEADYLYDWTILKYQEIQQAKAQNLSIAPVALPTSLEPVDADEHTEVNDCTQNDVTKPTIYTDRPRVCMKLRVANVENTDLDDEIETDKQNVNNGLPISTVTPIVSTENVPKPESTVEAPNPDGVLENKCGDSGDVVPSLRRVSSIN 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00892 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Tsu01g00892 428 ProSitePatterns Protein kinases ATP-binding region signature. 15 39 IPR017441 GO:0005524
Tsu01g00892 428 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 403 - -
Tsu01g00892 428 Gene3D Transferase(Phosphotransferase) domain 1 1 337 - -
Tsu01g00892 428 SMART serkin_6 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00892 428 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00892 428 PANTHER CASEIN KINASE-RELATED 1 403 - -
Tsu01g00892 428 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Tsu01g00892 428 Pfam Protein kinase domain 9 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00892 Tsu-Chr1 8146691 8151554 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00892 8 213 MAP Kinase Kinase Kinase AT1G54960 27.523 1.33e-14 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Tsu01g00892 Pkinase 6.2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00892 K08960 - gmx:100782913 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00461 07 3549499 3557919 Tsu01g00892 01 8146691 8151554 PCT