Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00890 ATGGCCAAAATCGCGTTAAGAATAAGCCGAGAGGCCACTAAGCCCGATTGTATTCAAGCTCTAATTGTTGAATTCATTGTTACCTTTCTCTATGTCTTTGCTGGTGTTGGTTCTACAATGGCTGCACataAGTTAACTGAAGATGCATTAGTTGCATTACTTTTTGTGGCTGTGGCGCACACTCTTTTGGTGGCTGTAATGATTTCCGCAGGCCACATTTCGGGTGGCCATTTGAATCCCTCTGTGACATTGGGACTCCTTGTCGGAGGCCACATCACAATCGTCCGAGCCATTCTATATTGGATTGTTCAATTAATAGCATCTTCAACAGCTTGTTATCTTCTTCATTATCTCACGACTGGATTGCCAATTCCAACTCATACACTTGGAAGTGGAATAGGGTATACTCAAGGTGTAGTTTGGGAGATGGGGTTGACATTCTCTTTGTTGTTCACTGTATATGCAACCATGGTAGATCCAAAGAAAGGAGGAATTTCTGGGCTTGGCCCACTTTTGATTGGGTTTGTGGTAGGGGCTAATATCATGGCTGGTGGGGCTTTCTCAGCTGCTTCGACGAACCCGGCAAGATCATTTGGGCCTGCTCTGGTTAGTGGAAATTGGACTAATCATTGGGTTTATTGGGTTGGGCCTCTTATTGGTAGTGGACTTGCTGGTTTCATTTATGAGAATTTCTTCATTAATAGAGATTATGTTCCTCTAGCTGTAGATGAAGAAAGATACTAG 744 0.4328 MAKIALRISREATKPDCIQALIVEFIVTFLYVFAGVGSTMAAHKLTEDALVALLFVAVAHTLLVAVMISAGHISGGHLNPSVTLGLLVGGHITIVRAILYWIVQLIASSTACYLLHYLTTGLPIPTHTLGSGIGYTQGVVWEMGLTFSLLFTVYATMVDPKKGGISGLGPLLIGFVVGANIMAGGAFSAASTNPARSFGPALVSGNWTNHWVYWVGPLIGSGLAGFIYENFFINRDYVPLAVDEERY 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00890 247 CDD MIP 19 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g00890 247 Pfam Major intrinsic protein 12 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g00890 247 PANTHER AQUAPORIN TIP4-1 2 246 - -
Tsu01g00890 247 SUPERFAMILY Aquaporin-like 11 235 IPR023271 -
Tsu01g00890 247 ProSitePatterns MIP family signature. 77 85 IPR022357 -
Tsu01g00890 247 PRINTS Major intrinsic protein family signature 59 83 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g00890 247 PRINTS Major intrinsic protein family signature 96 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g00890 247 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g00890 247 PRINTS Major intrinsic protein family signature 141 159 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g00890 247 PRINTS Major intrinsic protein family signature 211 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g00890 247 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu01g00890 247 Gene3D Glycerol uptake facilitator protein. 2 241 IPR023271 -
Tsu01g00890 247 PANTHER AQUAPORIN-8 2 246 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00890 Tsu-Chr1 8141434 8142465 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00890 1 245 Major Intrinsic Protein MIP AT2G25810 73.061 2.69e-122 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00890 K09873 - rcu:8271179 368.622